genome.fa.s9629.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009629.1 Hibiscus syriacus cultivar Beakdansim tig00117022_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  453070

Tables:   1   2   3   

This is table  2  of  3  ( 275 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
253878--253962	29	3.0	28	82	5	107	47	16	9	27	1.77
253867--253961	29	3.5	27	78	13	97	46	16	9	27	1.78
254209--254312	36	2.9	36	80	4	113	36	11	19	32	1.87
254978--255027	4	13.0	4	83	8	68	24	0	26	50	1.50
256204--256241	11	3.4	11	89	7	58	5	13	10	71	1.30
256199--256246	12	3.9	12	81	8	53	4	12	12	70	1.29
256225--256271	18	2.6	17	75	21	51	4	12	14	68	1.36
256844--256918	20	3.5	20	70	20	62	38	10	25	25	1.88
256854--256933	26	3.3	26	66	20	73	43	10	23	22	1.83
256842--256935	46	2.1	45	89	2	143	39	9	25	25	1.86
260406--260529	59	2.1	59	100	0	248	54	17	8	19	1.69
261987--262046	25	2.4	25	100	0	120	25	13	23	38	1.91
262104--262143	3	13.3	3	89	10	64	70	0	0	30	0.88
262096--262139	22	2.0	22	91	8	72	68	2	0	29	1.02
269383--269445	31	2.0	31	90	0	99	26	14	9	49	1.74
269389--269455	31	2.2	31	86	0	89	28	17	7	46	1.75
270760--270798	16	2.4	16	100	0	78	30	12	10	46	1.75
270761--270809	16	2.7	18	78	21	57	32	10	12	44	1.75
271048--271125	31	2.5	31	95	0	138	51	16	12	19	1.76
272373--272400	11	2.5	11	100	0	56	35	35	10	17	1.85
273090--273150	24	2.5	24	89	0	86	36	22	21	19	1.95
273218--273266	20	2.5	20	89	0	71	53	10	6	30	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
275183--275248	30	2.2	30	94	2	114	51	13	12	22	1.74
275380--275545	60	2.8	59	78	3	181	33	21	5	39	1.76
275736--275858	60	2.0	60	82	3	149	43	6	20	30	1.77
276168--276231	19	3.3	19	72	14	51	51	6	0	42	1.27
280474--280526	20	2.7	20	85	5	72	30	30	15	24	1.95
280615--280659	20	2.2	20	92	0	72	46	22	11	20	1.81
280622--280660	20	2.0	20	100	0	78	46	23	15	15	1.83
280814--280859	20	2.3	20	96	0	83	45	23	13	17	1.83
280581--280974	199	2.0	199	93	1	682	40	20	11	27	1.86
281369--281423	20	2.8	20	91	0	83	52	18	14	14	1.74
281423--281466	20	2.2	20	91	0	70	20	11	15	52	1.74
281430--281486	20	2.8	20	89	0	78	19	14	15	50	1.77
281436--281494	20	3.0	20	87	0	73	23	11	15	49	1.77
283142--283191	21	2.4	21	79	0	55	18	10	34	38	1.84
283208--283303	21	4.5	22	70	10	76	19	13	33	33	1.91
283145--283305	63	2.6	63	78	5	148	19	13	35	32	1.90
283211--283303	42	2.2	43	82	5	127	20	12	33	33	1.91
283208--283316	42	2.6	42	75	8	114	18	16	33	32	1.93
283605--283652	21	2.3	21	88	0	69	20	37	18	22	1.94
285138--285190	20	2.7	20	81	0	70	43	22	15	18	1.87
287951--287984	12	2.8	12	90	0	50	14	0	29	55	1.40
288781--288929	20	7.4	20	71	11	56	34	14	24	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
288760--288849	40	2.2	40	82	3	101	36	12	20	31	1.89
288912--288951	20	2.0	20	90	0	62	27	7	30	35	1.84
290866--291021	31	5.0	31	92	1	251	37	21	19	21	1.95
291845--291889	21	2.1	21	87	0	63	15	24	28	31	1.96
294734--294889	31	5.0	31	92	1	251	37	21	19	21	1.95
295068--295114	23	2.0	24	91	4	78	36	19	0	44	1.51
295717--295761	21	2.1	21	87	0	63	15	24	28	31	1.96
296626--296763	69	2.0	69	91	0	222	25	13	21	39	1.89
296837--296887	20	2.5	19	84	9	57	3	15	0	80	0.86
296837--296892	21	2.7	20	84	15	62	3	16	1	78	0.97
300037--300108	9	7.7	9	70	14	56	72	4	2	20	1.15
300040--300087	20	2.3	21	89	7	71	72	4	0	22	1.01
300051--300106	20	2.8	20	78	5	60	71	5	3	19	1.21
300341--300406	23	3.0	22	75	18	57	66	4	6	22	1.32
301059--301155	42	2.3	42	87	0	131	29	35	16	18	1.93
301270--301319	21	2.4	21	79	0	64	18	12	34	36	1.87
301397--301445	21	2.3	21	85	0	62	20	20	30	28	1.98
301720--301817	21	4.7	21	89	5	153	20	36	19	23	1.95
304577--304630	24	2.2	24	86	0	72	42	20	14	22	1.88
305544--305634	20	4.6	20	72	14	80	34	12	23	30	1.91
305546--305713	40	4.2	40	75	7	137	33	13	25	26	1.93
305542--305660	20	5.9	20	68	10	73	36	10	23	29	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
305626--305692	20	3.4	19	83	4	62	32	14	29	22	1.94
305656--305751	20	4.8	19	79	13	79	28	15	29	27	1.96
313323--313463	66	2.1	66	85	5	187	31	16	23	29	1.96
321934--322030	32	3.1	32	78	14	128	28	17	18	35	1.94
321933--322033	31	3.2	31	81	10	125	28	18	18	33	1.95
322021--322114	30	3.1	30	90	3	136	20	21	27	30	1.98
324205--324266	26	2.4	25	78	7	70	19	30	25	24	1.98
328780--328830	26	1.9	27	88	4	77	58	5	3	31	1.40
347999--348045	19	2.5	19	78	18	53	61	17	0	21	1.34
352260--352319	27	2.2	27	96	0	111	38	18	31	11	1.87
352447--352529	24	3.5	24	100	0	166	25	30	32	12	1.92
353366--353394	10	2.9	10	100	0	58	0	31	41	27	1.56
356335--356362	12	2.3	12	100	0	56	21	14	10	53	1.70
357414--357467	27	2.0	27	96	0	99	31	9	22	37	1.86
359285--359412	60	2.1	60	98	0	247	35	20	19	24	1.95
364511--364630	58	2.1	59	95	3	217	31	8	20	40	1.82
366962--366993	2	16.0	2	100	0	64	50	0	0	50	1.00
367882--368163	142	2.0	139	91	4	451	34	17	20	27	1.95
369924--370004	2	40.5	2	100	0	162	49	0	0	50	1.00
372720--372750	2	15.5	2	100	0	62	51	0	0	48	1.00
373790--375058	214	6.0	213	81	4	1370	40	24	10	24	1.87
373791--375053	418	3.0	420	82	4	1427	40	24	10	24	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
377088--377141	25	2.2	25	89	0	81	22	22	9	46	1.80
377085--377134	25	2.0	25	100	0	100	20	24	8	48	1.76
380895--380942	7	6.9	7	100	0	96	12	29	14	43	1.82
381814--382182	20	18.5	20	85	4	458	34	26	18	20	1.96
382856--382902	24	2.0	24	87	8	69	25	14	21	38	1.92
383077--383101	12	2.1	12	100	0	50	72	0	28	0	0.86
385407--385712	19	17.4	19	78	16	338	47	18	19	14	1.83
385407--385734	33	9.5	33	76	15	154	46	18	20	14	1.84
385435--385712	52	5.2	53	90	5	347	47	17	20	15	1.83
385473--385712	71	3.4	71	83	11	346	47	17	20	15	1.83
385407--385750	71	4.9	71	76	15	281	46	18	20	15	1.84
385741--385842	19	5.6	19	85	12	151	14	23	17	44	1.86
385949--385985	14	2.6	14	91	0	65	45	21	0	32	1.52
387944--388000	14	3.7	14	77	20	60	45	22	21	10	1.82
387925--388017	33	2.8	33	95	0	168	47	21	20	10	1.80
387888--388022	19	7.6	19	76	16	128	45	23	19	11	1.82
388018--388146	19	7.3	19	73	17	116	9	16	28	45	1.78
388018--388109	33	2.8	33	91	3	141	8	17	28	45	1.78
388188--388657	92	5.1	93	97	1	903	45	19	12	21	1.83
388188--388657	185	2.6	185	98	1	901	45	19	12	21	1.83
390364--390439	14	4.7	14	74	22	53	42	23	25	9	1.83
390378--390461	19	4.7	19	78	14	97	42	22	23	10	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
390356--390461	52	2.0	52	94	0	185	44	20	24	10	1.83
390473--390527	14	3.6	14	73	21	56	9	27	23	40	1.85
390648--390718	33	2.2	33	92	0	115	47	18	22	11	1.80
390900--390954	22	2.5	22	81	0	74	20	16	40	23	1.91
391099--391292	20	9.6	20	82	5	221	19	19	25	35	1.95
391099--391292	60	3.2	60	83	0	253	19	19	25	35	1.95
391285--391361	21	3.7	20	70	13	57	27	16	23	32	1.96
391347--391398	20	2.6	20	96	0	95	21	13	26	38	1.90
392797--392840	20	2.1	21	91	4	72	50	0	0	50	1.00
392815--392926	43	2.7	44	83	9	137	50	0	0	49	1.06

Tables:   1   2   3