genome.fa.s9629.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009629.1 Hibiscus syriacus cultivar Beakdansim tig00117022_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  453070

Tables:   1   2   3   

This is table  3  of  3  ( 275 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
415554--415684	20	6.4	21	73	9	101	40	19	22	18	1.91
415571--415646	21	3.7	21	80	3	100	40	18	25	15	1.90
415554--415646	41	2.3	41	98	0	177	39	19	24	16	1.91
415573--415707	41	3.3	41	83	6	141	38	20	21	20	1.94
415635--415728	20	4.7	20	80	2	89	34	23	18	24	1.96
416246--416301	19	2.8	20	83	5	87	50	23	16	10	1.76
416313--416492	19	9.8	19	74	14	155	11	21	21	45	1.84
416313--416493	33	4.9	38	76	12	139	12	21	21	44	1.84
416435--416492	20	2.9	20	80	10	64	13	24	18	43	1.87
418492--418614	42	2.9	42	80	2	122	22	36	17	22	1.95
418548--418614	21	3.2	21	66	6	55	23	35	20	19	1.95
419970--420006	14	2.6	14	91	0	65	29	0	24	45	1.53
420169--420294	33	3.9	32	85	10	184	15	23	19	42	1.89
420162--420293	65	2.0	66	95	1	239	16	22	19	40	1.91
422587--422611	12	2.1	12	100	0	50	0	28	0	72	0.86
422786--422839	24	2.2	24	90	0	81	38	20	16	24	1.92
423899--423976	20	3.9	20	96	0	138	37	23	23	16	1.94
424000--424053	14	3.5	14	77	22	63	11	20	20	48	1.80
423995--424072	33	2.4	33	91	0	120	12	23	21	42	1.87
426062--426128	19	3.5	19	83	4	89	37	23	23	14	1.93
426176--426233	14	3.9	14	75	16	62	8	17	24	50	1.74
426171--426249	32	2.4	33	91	2	133	10	18	22	48	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
426234--426288	20	2.8	19	83	8	65	16	23	23	36	1.94
426755--426799	18	2.5	18	88	0	72	13	15	44	26	1.83
428118--428155	20	1.9	20	88	0	58	50	21	15	13	1.78
428412--428455	22	2.0	22	95	0	79	18	15	45	20	1.85
428643--428695	20	2.7	20	87	0	79	24	16	28	30	1.97
428663--428740	41	1.9	41	83	0	102	23	15	20	41	1.90
428726--428818	41	2.3	41	98	0	132	18	24	17	39	1.91
428731--428801	21	3.4	21	80	3	99	15	23	18	42	1.88
428745--428818	20	3.7	20	80	3	94	17	22	18	40	1.91
429113--429205	31	3.1	30	83	6	116	26	10	3	59	1.46
429499--429553	27	2.0	27	92	3	92	34	0	0	65	0.93
436015--436069	25	2.2	25	100	0	110	50	16	18	14	1.77
444973--445003	2	15.5	2	100	0	62	48	0	0	51	1.00

Tables:   1   2   3

The End!