genome.fa.s9630.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009630.1 Hibiscus syriacus cultivar Beakdansim tig00117026_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1249403

Tables:   1   2   3   4   5   6   

This is table  6  of  6  ( 671 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1080570--1080615	21	2.1	22	92	4	76	60	2	0	36	1.09
1090209--1090572	201	1.8	201	87	1	541	40	20	9	28	1.84
1090588--1090633	22	2.2	20	84	7	56	43	28	4	23	1.73
1094239--1095839	799	2.0	797	96	0	2968	28	23	15	32	1.95
1119747--1119781	18	1.9	18	94	0	61	17	51	17	14	1.77
1121120--1121160	18	2.3	18	82	0	55	53	4	17	24	1.63
1122247--1122380	24	5.6	24	91	3	207	25	16	19	38	1.92
1122594--1122646	2	26.5	2	100	0	106	49	0	0	50	1.00
1127592--1127629	8	4.8	8	90	9	60	65	2	0	31	1.06
1128470--1128508	2	19.5	2	100	0	78	51	48	0	0	1.00
1146569--1146614	24	1.9	24	86	0	65	6	28	19	45	1.75
1147931--1147972	18	2.3	18	76	11	50	59	0	0	40	0.97
1148678--1148708	16	1.9	16	100	0	62	38	6	0	54	1.26
1148733--1148769	17	2.2	17	86	13	51	54	0	8	37	1.30
1148844--1148876	17	1.9	17	93	0	57	33	0	0	66	0.92
1149595--1149693	48	2.1	48	98	0	189	35	5	17	42	1.71
1151756--1151805	21	2.4	21	100	0	100	34	28	16	22	1.95
1152577--1152619	21	2.0	21	86	0	59	30	27	25	16	1.97
1152599--1152750	67	2.2	69	87	3	211	27	25	28	18	1.98
1153053--1153124	29	2.5	29	90	0	108	38	9	13	37	1.78
1153139--1153198	30	2.0	31	90	3	95	38	6	21	33	1.80
1153418--1153484	22	3.0	22	97	0	125	19	25	28	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1159520--1159562	21	2.0	21	86	0	59	30	27	25	16	1.97
1159542--1159696	69	2.2	69	87	2	213	27	25	29	18	1.98
1160000--1160071	29	2.5	29	90	0	108	38	9	13	37	1.78
1160086--1160144	30	2.0	30	90	6	93	37	6	22	33	1.80
1160362--1160428	22	3.0	22	97	0	125	19	25	28	26	1.99
1186042--1186084	15	2.9	14	83	16	52	46	13	16	23	1.83
1186734--1186831	29	3.4	29	80	4	108	46	18	3	31	1.64
1186843--1186868	13	2.0	13	100	0	52	15	23	46	15	1.83
1193364--1193519	29	5.4	28	82	8	186	44	16	4	35	1.68
1193375--1193519	59	2.5	58	91	2	236	44	14	4	37	1.65
1195420--1195451	2	16.0	2	100	0	64	50	0	0	50	1.00
1196085--1196745	165	4.0	165	86	1	869	31	7	36	24	1.84
1199544--1199645	49	2.1	48	96	1	150	60	1	7	29	1.36
1200471--1200515	19	2.3	19	80	3	54	64	0	0	35	0.94
1200480--1200513	10	3.5	10	84	8	52	67	0	0	32	0.91
1200922--1200983	30	2.2	27	83	13	72	48	1	1	48	1.21
1200931--1200983	24	2.1	27	82	10	67	49	1	0	49	1.12
1200935--1200989	19	2.9	19	84	10	69	50	1	0	47	1.11
1201098--1201141	17	2.4	18	81	11	54	54	0	0	45	0.99
1201150--1201217	16	4.6	15	71	18	54	48	0	1	50	1.10
1211958--1211987	14	2.1	14	93	0	51	36	6	10	46	1.64
1216676--1216725	2	25.0	2	100	0	100	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1223214--1223291	35	2.2	34	80	10	86	44	15	0	39	1.46
1223286--1223376	33	2.7	35	89	3	132	31	0	24	43	1.54
1224894--1224941	23	2.1	23	84	0	60	35	10	18	35	1.85
1225332--1225394	23	2.7	23	92	0	99	38	20	4	36	1.74
1225765--1225827	23	2.7	23	92	0	99	38	20	4	36	1.74
1226189--1226260	23	3.2	22	88	4	99	38	22	4	34	1.73
1225273--1226471	433	2.8	433	99	0	2357	38	13	7	40	1.73
1226678--1226763	39	2.2	39	93	0	145	18	13	18	48	1.80
1227019--1227055	18	2.1	18	89	0	56	51	10	5	32	1.60
1227477--1227538	23	2.4	26	74	20	67	40	16	4	38	1.69
1227486--1227539	23	2.3	23	93	0	90	40	16	5	37	1.72
1230018--1231004	182	5.4	183	96	0	1797	33	16	13	36	1.88
1232467--1232541	3	25.0	3	73	0	60	22	34	6	36	1.81
1232471--1232553	12	6.9	12	83	0	94	20	34	8	36	1.83
1232475--1232553	36	2.2	36	90	0	122	20	35	8	35	1.84
1232495--1232556	18	3.4	18	79	0	79	17	35	9	37	1.83
1232471--1232556	6	14.3	6	77	0	64	19	34	8	37	1.82
1234006--1235271	196	6.5	197	96	2	2342	32	16	15	36	1.89
1234006--1235271	391	3.2	391	96	2	2307	32	16	15	36	1.89
1235401--1235434	17	2.1	17	88	5	52	55	5	2	35	1.39
1237305--1237369	21	3.1	21	80	6	69	15	29	15	40	1.88
1239572--1239618	20	2.4	19	82	10	67	19	17	10	53	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1239736--1239781	20	2.3	20	89	10	76	17	17	10	54	1.70
1239847--1240293	229	2.0	225	92	2	752	39	7	7	45	1.61
1240634--1240716	30	2.7	31	87	9	116	48	6	10	34	1.63
1242411--1242460	21	2.5	20	76	3	55	40	6	0	54	1.25
1243059--1243154	40	2.4	39	84	6	131	20	35	11	32	1.89

Tables:   1   2   3   4   5   6

The End!