genome.fa.s9631.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009631.1 Hibiscus syriacus cultivar Beakdansim tig00117027_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  652059

Tables:   1   2   3   

This is table  1  of  3  ( 360 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
290--360	21	3.3	20	77	14	70	39	22	4	33	1.74
305--365	21	2.7	23	82	10	81	37	21	4	36	1.75
720--791	23	3.1	23	89	2	99	40	22	4	33	1.73
1--1000	425	2.3	427	96	3	1831	39	12	7	40	1.72
1207--1286	39	2.1	39	92	0	133	17	15	18	48	1.81
1543--1579	18	2.1	18	89	0	56	51	10	5	32	1.60
1991--2052	23	2.4	26	74	20	67	40	16	4	38	1.69
2000--2053	23	2.3	23	93	0	90	40	16	5	37	1.72
4528--5510	181	5.4	182	95	1	1773	33	16	14	36	1.89
6969--7043	3	25.0	3	73	0	60	22	34	6	36	1.81
6973--7055	12	6.9	12	83	0	94	20	34	8	36	1.83
6977--7055	36	2.2	36	90	0	122	20	35	8	35	1.84
6997--7058	18	3.4	18	79	0	79	17	35	9	37	1.83
6973--7058	6	14.3	6	77	0	64	19	34	8	37	1.82
8512--9787	197	6.5	197	98	0	2448	32	16	15	36	1.89
8512--9787	395	3.2	394	98	0	2448	32	16	15	36	1.89
8512--9787	592	2.2	592	98	0	2450	32	16	15	36	1.89
9917--9960	19	2.4	19	92	3	72	56	9	2	31	1.43
11750--11810	32	1.9	32	89	0	95	22	47	0	29	1.52
11844--11908	21	3.1	21	80	6	69	15	29	15	40	1.88
14135--14177	20	2.3	18	85	14	61	20	16	11	51	1.75
14140--14186	20	2.4	19	82	10	67	19	17	10	53	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14308--14353	20	2.3	20	89	10	76	17	17	10	54	1.70
15210--15296	33	2.6	33	94	0	147	48	6	10	34	1.64
17700--17793	41	2.3	41	92	0	161	21	34	12	31	1.91
18654--18702	24	2.0	25	88	4	73	42	0	12	44	1.41
20749--20803	21	2.7	20	76	18	58	21	3	1	72	1.09
20810--20858	17	2.8	17	81	9	55	26	6	6	61	1.43
27032--27078	19	2.4	20	85	7	78	38	4	25	31	1.75
28199--28236	12	3.2	12	100	0	76	31	34	18	15	1.92
28770--28830	31	1.9	33	90	6	99	45	0	16	37	1.47
36193--36288	20	4.8	20	97	1	174	28	14	18	38	1.90
45428--45655	41	5.6	41	90	5	340	21	18	23	36	1.95
45598--45649	21	2.6	19	78	6	59	21	19	23	36	1.95
45727--45759	6	5.5	6	100	0	66	33	51	15	0	1.43
46398--46467	22	3.3	22	76	11	92	40	24	17	18	1.91
46376--46489	41	2.8	41	89	4	167	40	21	18	19	1.92
46387--46448	19	3.1	19	71	13	61	41	19	19	19	1.90
46409--46476	22	3.2	21	72	15	61	38	22	19	20	1.94
46461--46594	20	6.6	20	76	3	124	38	24	20	16	1.93
46458--46794	41	8.4	41	78	8	207	36	24	19	19	1.95
46417--46574	82	1.9	81	83	7	203	37	24	18	18	1.93
46481--46554	21	3.6	21	77	3	96	33	27	18	20	1.96
46598--46666	19	3.5	19	73	11	75	39	21	20	18	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46616--46687	22	3.4	22	73	11	87	37	25	19	18	1.94
46676--46793	21	5.7	21	85	2	114	33	26	18	22	1.97
46700--46751	20	2.6	20	100	0	104	38	26	25	9	1.86
46421--46751	177	1.9	176	84	5	452	37	24	20	18	1.94
46635--46772	61	2.2	63	87	8	196	35	26	19	18	1.95
47748--47815	20	3.5	20	80	10	77	45	2	0	51	1.16
47751--47837	3	29.3	3	69	2	50	43	3	1	51	1.26
53525--53581	20	2.8	20	94	0	105	29	17	24	28	1.97
53583--53672	19	4.3	20	76	16	94	36	5	27	30	1.80
53581--53662	44	1.9	41	85	7	110	32	6	28	32	1.82
53974--54000	6	4.5	6	100	0	54	0	14	51	33	1.43
54090--54191	21	5.0	21	70	9	86	36	21	20	21	1.95
54089--54214	40	3.2	40	91	0	198	34	23	20	21	1.96
54089--54184	19	4.8	20	69	8	79	36	21	19	21	1.95
54233--54278	23	2.1	22	88	8	67	19	13	19	47	1.81
54244--54290	23	2.0	23	91	0	76	19	8	21	51	1.73
54405--54450	19	2.4	19	85	3	56	21	17	30	30	1.96
54416--54452	19	1.9	19	94	0	65	21	16	29	32	1.95
58758--58854	42	2.3	41	83	1	113	26	21	21	29	1.99
58974--59064	41	2.2	41	90	2	137	24	24	19	31	1.98
59134--59216	42	2.0	41	90	2	130	27	22	22	26	1.99
58985--59235	134	1.9	134	87	5	373	30	19	21	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59201--59271	36	2.0	36	85	0	97	36	22	19	21	1.95
59435--59606	53	3.2	53	86	4	240	30	20	26	22	1.98
59767--59855	9	9.7	9	72	10	65	44	2	1	51	1.21
59762--59856	3	32.3	3	73	4	59	44	2	1	52	1.19
59755--59846	20	4.7	20	75	6	71	45	2	1	51	1.20
62032--62065	17	2.1	16	88	5	50	76	0	8	14	1.01
64400--65082	341	2.0	338	98	0	1330	25	18	20	36	1.95
77249--77391	60	2.4	61	87	6	195	31	23	4	40	1.75
77249--77334	30	2.9	29	71	22	72	31	23	4	40	1.75
77497--77648	60	2.5	59	81	10	184	39	5	21	33	1.76
78929--79032	44	2.4	44	100	0	208	32	14	11	41	1.82
86451--86484	17	2.1	17	89	10	54	38	11	17	32	1.86
91836--92302	234	2.0	235	92	0	783	26	16	17	38	1.91
99340--99370	16	1.9	16	93	0	53	25	19	19	35	1.95
100461--100511	21	2.4	21	80	6	59	25	0	21	52	1.47
104429--104603	20	8.6	20	79	5	172	26	24	20	28	1.99
104783--104826	22	2.0	22	86	0	61	22	36	15	25	1.94
105219--105268	20	2.5	20	90	0	73	10	16	24	50	1.75
105235--105275	20	2.0	20	90	0	64	12	12	17	58	1.63
105239--105282	20	2.2	20	83	0	52	13	11	18	56	1.66
106599--106671	21	3.7	20	72	15	62	31	42	12	13	1.81
107242--107328	20	4.4	20	86	2	106	19	18	25	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107817--107858	21	2.2	19	87	12	59	21	35	19	23	1.96
109306--109368	14	4.4	14	78	6	63	39	0	14	46	1.45
109473--109511	20	2.0	20	89	0	60	48	20	20	10	1.78
109505--109547	20	2.2	20	83	4	52	25	20	25	27	1.99
109555--109831	20	14.8	20	73	14	223	25	16	22	35	1.95
109573--109675	54	1.9	54	84	4	136	25	15	22	36	1.93
109514--109831	74	4.3	74	77	4	239	25	17	22	35	1.95
109555--109769	94	2.3	94	84	3	281	24	17	23	34	1.95
109668--109823	54	2.9	54	92	0	258	22	17	25	35	1.95
110112--110146	18	1.9	18	94	0	61	17	2	25	54	1.57
111999--112035	14	2.6	14	91	4	56	5	21	21	51	1.68
113096--113231	40	3.4	40	88	2	184	24	21	23	30	1.99
113081--113231	20	7.6	20	83	5	153	25	21	23	29	1.99
124074--124164	20	4.9	20	68	20	72	34	5	15	45	1.69
124073--124220	53	2.8	52	95	3	271	33	5	13	47	1.65
124179--124218	20	2.0	20	95	0	71	37	5	12	45	1.64
126194--126232	20	2.0	20	94	0	69	35	5	17	41	1.72
126193--126340	53	2.8	52	92	3	253	33	6	12	47	1.66
126246--126285	20	2.0	21	85	14	57	37	5	12	45	1.64
126297--126341	20	2.3	19	88	7	72	35	4	11	48	1.59
131398--131430	15	2.2	15	100	0	66	24	30	15	30	1.95
133306--133373	28	2.4	28	95	0	118	14	22	52	10	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
139783--139816	14	2.4	14	90	0	59	55	17	0	26	1.42
140606--140668	33	1.9	33	100	0	126	36	15	31	15	1.90
141144--141207	33	1.9	34	96	3	121	43	15	12	28	1.83
146553--146600	24	2.0	24	88	8	71	50	6	18	25	1.70
153144--153568	215	2.0	215	99	0	832	34	17	20	27	1.95
157397--157967	112	5.1	112	92	0	894	46	14	14	25	1.82
157839--158290	182	2.5	182	91	1	699	42	13	16	27	1.85
158582--158624	20	2.2	20	82	0	50	46	9	16	27	1.77
158845--158892	23	2.1	23	96	0	87	37	16	8	37	1.79
159791--159847	23	2.4	24	83	16	75	29	1	3	64	1.20

Tables:   1   2   3