genome.fa.s9631.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009631.1 Hibiscus syriacus cultivar Beakdansim tig00117027_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  652059

Tables:   1   2   3   

This is table  2  of  3  ( 360 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
160463--160510	2	24.0	2	100	0	96	50	0	0	50	1.00
169160--169236	7	11.6	7	82	12	74	46	32	0	20	1.51
169159--169236	20	3.9	19	79	12	77	46	33	0	20	1.51
169150--169248	7	14.7	7	78	6	71	42	37	1	19	1.58
169102--169464	162	2.2	165	84	6	463	43	25	6	23	1.78
169447--169476	14	2.1	14	93	0	51	36	13	10	40	1.78
169505--169543	20	2.0	20	94	0	69	46	17	0	35	1.49
169803--170117	157	2.0	158	97	0	596	32	15	17	34	1.91
172157--172193	17	2.2	17	100	0	74	24	16	32	27	1.96
172243--172304	31	2.0	31	83	0	79	22	14	19	43	1.87
175075--175294	35	6.1	37	75	17	187	45	4	5	44	1.47
175094--175331	37	6.9	35	78	14	207	44	4	6	45	1.48
175281--175382	49	2.0	49	80	14	111	44	4	9	41	1.59
175254--175411	83	1.9	84	83	10	209	44	5	7	43	1.54
175337--175467	33	4.2	28	76	17	109	41	3	8	45	1.52
184040--184072	15	2.2	15	94	0	57	33	0	0	66	0.92
184147--184194	19	2.5	20	76	6	55	25	8	2	64	1.32
184490--184531	19	2.2	19	91	0	66	45	7	4	42	1.52
188837--188877	22	1.9	21	85	14	57	48	4	0	46	1.23
188890--188921	14	2.2	15	94	5	57	31	0	0	68	0.90
189464--189539	31	2.5	30	79	12	91	43	3	2	50	1.34
191066--191154	44	2.0	43	85	6	117	50	1	2	46	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
191249--191314	28	2.3	29	85	12	93	53	1	0	45	1.09
191245--191336	45	2.0	46	83	10	118	52	1	1	45	1.15
191287--191335	17	2.6	18	84	15	64	55	0	2	42	1.11
192028--192058	15	2.1	15	93	0	53	45	0	6	48	1.28
192310--192345	18	2.0	18	100	0	72	27	0	5	66	1.13
198588--198698	38	2.9	38	93	2	188	16	25	28	29	1.96
198588--198702	19	6.1	19	85	3	160	16	25	28	29	1.97
198598--198715	38	3.1	38	86	2	103	15	29	28	26	1.96
198608--198715	57	1.9	57	84	0	144	15	29	28	25	1.96
198700--198732	17	1.9	17	100	0	66	18	48	24	9	1.76
198701--198765	22	3.0	22	97	0	121	18	46	26	9	1.79
205931--206029	10	10.3	9	75	12	72	17	27	26	29	1.97
205932--206029	19	5.1	19	77	14	69	16	27	26	29	1.97
205931--206029	29	3.4	29	82	8	112	17	27	26	29	1.97
206025--206080	17	3.3	17	72	18	53	19	44	23	12	1.84
206031--206080	12	4.3	12	80	10	59	20	44	24	12	1.85
211286--211334	2	24.5	2	100	0	98	48	0	0	51	1.00
214813--214872	26	2.3	26	94	0	102	31	8	3	56	1.45
214813--214858	14	3.4	14	73	11	51	32	8	2	56	1.42
215392--215435	21	2.1	21	95	0	79	43	22	6	27	1.78
216528--216579	2	26.0	2	100	0	104	50	0	0	50	1.00
217686--217760	14	5.4	14	69	21	50	46	0	6	46	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
217686--217775	28	3.1	29	88	6	137	45	0	8	45	1.34
218771--218830	24	2.5	24	83	0	75	26	41	13	18	1.87
223938--224050	60	1.9	59	80	5	129	43	3	20	32	1.69
240677--240714	19	2.0	20	84	5	51	60	7	0	31	1.25
241708--241741	3	10.7	3	87	12	50	64	0	35	0	0.94
255616--255655	18	2.3	18	83	8	57	25	5	2	67	1.23
259913--260449	183	2.9	183	94	0	932	27	20	20	31	1.98
261637--261773	36	3.7	36	68	11	98	29	16	15	38	1.90
261589--261750	72	2.2	76	82	8	192	28	19	12	40	1.87
261589--261787	72	2.7	72	80	10	181	27	17	13	41	1.87
261781--261933	39	3.6	39	67	21	110	28	22	12	36	1.90
261836--262156	107	3.1	104	89	5	481	30	20	11	36	1.89
262056--262131	36	2.1	36	90	0	116	22	21	15	40	1.90
262331--262961	105	6.0	105	92	2	957	33	26	18	21	1.96
263504--263608	37	2.8	37	83	0	129	41	14	13	30	1.84
263964--264006	18	2.5	17	85	7	61	25	4	2	67	1.22
266320--266375	23	2.4	23	96	0	103	35	33	5	25	1.79
266655--266707	18	2.9	18	73	15	56	54	3	0	41	1.18
267098--267150	2	26.5	2	100	0	106	49	0	0	50	1.00
273735--273771	3	12.3	3	100	0	74	32	0	0	67	0.91
273892--273932	21	1.9	21	85	5	55	56	0	0	43	0.99
278172--278245	32	2.3	33	88	9	116	40	32	10	16	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
278245--278310	32	2.0	34	82	8	82	42	22	4	30	1.74
278754--278797	21	2.1	21	95	0	79	61	0	0	38	0.96
279044--279068	11	2.3	11	100	0	50	36	0	0	64	0.94
284454--284598	72	2.0	72	98	0	281	28	9	18	42	1.82
289083--289127	23	2.0	23	81	0	54	15	13	8	62	1.54
297111--297153	2	21.5	2	100	0	86	51	0	0	48	1.00
299928--299979	23	2.3	23	82	0	59	57	15	7	19	1.62
300293--300346	28	1.9	28	85	7	74	37	12	7	42	1.72
301590--301633	22	2.0	22	100	0	88	31	13	9	45	1.75
307648--307695	21	2.3	21	96	0	87	27	18	12	41	1.86
312287--312334	21	2.3	21	96	0	87	27	18	12	41	1.86
313364--313474	37	3.0	37	95	0	204	37	24	9	27	1.87
318703--318771	2	34.5	2	100	0	138	49	0	0	50	1.00
319269--319344	30	2.5	32	81	10	88	43	9	13	34	1.75
320808--320837	3	10.0	3	100	0	60	33	0	0	66	0.92
323578--323615	2	19.0	2	100	0	76	50	0	0	50	1.00
324609--324655	18	2.6	18	90	9	78	68	0	6	25	1.13
324665--324747	30	2.7	30	83	3	103	56	8	6	28	1.53
325261--325337	37	2.1	37	100	0	154	35	10	5	49	1.59
325332--325600	30	9.2	29	75	12	160	35	7	3	52	1.48
325327--325503	58	3.0	58	79	4	158	36	9	1	51	1.45
326207--326285	31	2.5	31	85	2	95	60	6	2	30	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
326557--326582	13	2.0	13	100	0	52	38	0	0	61	0.96
327065--327143	28	2.8	30	78	16	80	53	1	2	43	1.22
327137--327191	7	8.1	7	80	8	69	67	0	1	30	1.01
327137--327188	26	2.0	26	84	3	68	69	0	1	28	0.99
328128--328202	20	3.8	20	77	7	82	32	32	14	21	1.93
328128--328178	19	2.6	19	87	3	66	33	31	13	21	1.92
328212--328289	20	4.0	20	73	15	81	47	21	12	17	1.81
328834--328907	20	3.8	20	91	5	116	14	18	18	47	1.83
330854--330895	4	10.5	4	84	0	57	26	2	2	69	1.13
331041--331157	21	5.6	21	77	8	105	23	34	20	22	1.97
331039--331157	42	2.8	42	88	2	168	22	34	20	22	1.97
332530--332687	64	2.5	64	94	3	273	29	2	17	50	1.59
332784--332877	20	4.7	20	89	0	116	39	18	18	24	1.92
333216--333251	18	2.0	18	94	0	63	16	2	25	55	1.55
335510--335569	24	2.5	24	80	0	75	36	23	16	23	1.94
336302--336339	16	2.5	15	84	12	51	65	0	5	28	1.14
336496--336587	19	4.7	19	84	8	87	31	9	22	35	1.87
336495--336587	39	2.3	40	83	5	118	31	9	22	36	1.87
336495--336620	20	6.4	21	82	8	99	26	11	23	38	1.88
336614--336664	21	2.4	21	93	0	84	19	17	21	41	1.91
336916--337134	121	1.8	121	91	0	366	44	13	8	34	1.73
337300--337328	2	14.5	2	100	0	58	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
338265--338331	3	22.7	3	79	14	77	34	0	1	64	1.03
339055--339305	33	7.4	33	84	6	295	31	12	4	51	1.60
339505--339558	28	1.9	28	81	7	65	18	20	7	53	1.68
341589--341650	2	31.0	2	100	0	124	50	0	0	50	1.00
343284--343312	14	2.0	15	93	6	51	20	0	37	41	1.53
344738--344824	43	2.0	43	93	0	147	40	9	5	44	1.60
347286--347329	2	22.0	2	83	0	52	43	2	2	52	1.26
352250--352279	15	2.1	15	93	6	53	40	0	3	56	1.16
356541--356632	32	2.9	31	88	3	139	36	4	10	47	1.58
356603--356649	22	2.1	23	88	11	71	40	4	6	48	1.48

Tables:   1   2   3