genome.fa.s9631.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009631.1 Hibiscus syriacus cultivar Beakdansim tig00117027_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  652059

Tables:   1   2   3   

This is table  3  of  3  ( 360 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
358333--358522	92	2.1	91	96	1	353	30	21	12	35	1.90
359313--359386	25	3.0	25	77	16	73	50	1	0	48	1.09
359496--359563	23	3.0	22	74	8	55	44	0	4	51	1.21
359638--359728	26	3.4	27	74	11	89	50	1	0	48	1.08
359655--359702	23	2.1	23	88	0	69	43	2	0	54	1.12
366549--366741	73	2.5	76	84	8	234	24	14	23	37	1.92
366549--366788	79	3.1	77	76	11	233	24	15	22	37	1.93
376436--376529	45	2.0	48	93	6	167	39	17	8	35	1.80
377268--377385	55	2.1	57	84	6	152	44	11	11	32	1.76
384645--384877	118	2.0	115	95	4	423	30	15	20	33	1.94
393084--393124	21	2.0	21	95	4	75	19	34	21	24	1.97
397751--397794	20	2.3	18	84	7	52	54	6	0	38	1.27
405944--405990	14	3.7	14	71	26	50	44	0	4	51	1.21
405943--405992	23	2.1	24	96	3	93	48	0	4	48	1.20
406466--406510	20	2.3	20	84	3	65	26	28	0	44	1.55
408707--408769	24	2.6	24	78	19	60	50	3	0	46	1.17
408735--408804	32	2.2	31	82	10	79	45	4	0	50	1.21
408777--408830	23	2.3	23	87	6	74	53	1	1	42	1.22
408756--408849	28	3.4	28	72	20	72	48	1	1	48	1.15
408894--408947	27	2.0	28	85	10	76	50	0	1	48	1.11
409262--409293	14	2.3	14	94	0	55	53	12	3	31	1.54
424776--424831	24	2.3	24	82	14	71	62	1	0	35	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
424783--424826	16	2.8	16	85	0	61	70	0	0	29	0.88
451535--451579	18	2.5	18	85	0	63	24	26	11	37	1.89
463447--463741	147	2.0	147	97	2	558	33	15	23	27	1.95
463847--463946	5	17.0	5	72	27	65	10	22	51	17	1.74
463847--463946	13	8.5	11	73	26	57	10	22	51	17	1.74
463847--463946	18	5.6	18	100	0	200	10	22	51	17	1.74
468332--468405	5	13.0	5	76	23	67	8	21	52	17	1.70
468350--468405	23	2.4	23	100	0	112	7	21	53	17	1.67
468321--468383	18	3.5	18	100	0	126	9	22	50	17	1.74
470520--470626	24	4.5	24	75	0	106	47	16	14	20	1.82
470520--470628	48	2.3	48	78	0	128	47	16	15	20	1.82
473088--473119	7	4.4	7	92	7	55	25	28	34	12	1.92
473089--473135	15	3.3	15	91	5	71	21	25	38	14	1.92
473117--473203	18	4.6	18	86	13	129	9	21	51	17	1.73
473089--473135	8	6.5	8	79	20	59	21	25	38	14	1.92
473117--473203	41	2.1	41	100	0	174	9	21	51	17	1.73
473096--473181	13	6.3	13	76	22	79	13	23	46	16	1.83
473130--473186	23	2.5	23	100	0	114	7	22	52	17	1.68
475783--475815	2	16.5	2	100	0	66	48	0	0	51	1.00
478149--478311	21	7.9	19	73	15	128	22	20	22	34	1.96
478149--478283	61	2.2	61	91	2	216	20	20	25	34	1.96
478204--478308	42	2.5	42	95	0	183	21	20	22	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
479154--479245	21	4.4	21	78	10	116	39	19	18	22	1.93
488793--488848	15	3.6	15	79	9	67	42	12	12	32	1.80
488796--488846	17	3.1	17	77	11	61	43	11	9	35	1.75
489244--489298	13	4.2	13	75	13	58	49	10	3	36	1.56
489284--489382	33	3.0	33	94	1	164	45	15	7	32	1.73
489377--489416	21	1.9	21	94	0	71	47	7	15	30	1.72
491711--491756	12	3.6	12	81	16	56	17	19	17	45	1.85
491710--491749	15	2.9	14	85	14	57	20	17	15	47	1.83
495532--495564	16	2.1	16	94	0	57	33	6	27	33	1.81
504220--504388	20	8.3	20	75	8	117	26	24	20	28	1.99
504235--504293	21	2.7	22	76	5	75	22	25	20	32	1.98
504302--504389	20	4.4	20	89	0	131	27	26	20	26	1.99
505214--505267	24	2.2	24	90	0	81	20	16	20	42	1.89
505442--505466	12	2.1	12	100	0	50	72	0	28	0	0.86
507461--507503	19	2.3	19	100	0	86	32	30	9	27	1.88
507542--507581	18	2.2	18	90	0	62	52	27	2	17	1.57
507636--507906	140	1.9	140	97	0	515	29	13	14	42	1.84
507876--508114	20	12.9	20	70	15	145	35	20	18	25	1.95
507884--508093	54	3.9	53	82	1	249	36	21	17	24	1.95
507995--508154	74	2.2	74	88	0	239	34	20	21	24	1.97
507887--508093	108	1.9	108	85	3	283	36	21	17	24	1.95
507995--508156	34	4.4	39	70	15	128	34	19	21	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
508158--508188	14	2.2	14	94	0	53	9	19	22	48	1.78
508303--508364	14	4.3	14	77	6	61	46	14	0	38	1.45
510386--510432	20	2.3	20	92	0	76	19	19	27	34	1.96
510497--510540	20	2.2	20	91	0	70	18	20	25	36	1.95
510334--510545	112	1.9	111	95	2	381	23	19	22	34	1.97
510692--510741	18	2.8	18	100	0	100	42	6	20	32	1.76
512473--512513	20	2.0	20	95	0	73	56	17	14	12	1.68
513050--513265	20	10.6	20	81	6	202	28	20	24	26	1.99
513150--513258	43	2.7	40	78	7	110	32	22	21	24	1.98
515767--515892	62	2.0	62	90	0	198	38	14	19	28	1.90
524266--524300	9	3.9	9	88	0	52	0	48	8	42	1.33
524324--524376	12	4.5	12	83	4	72	13	43	0	43	1.43
543471--543513	2	21.5	2	100	0	86	48	0	0	51	1.00
549353--549399	22	2.1	22	88	7	69	46	10	17	25	1.79
549446--549487	21	2.0	22	85	4	59	30	35	16	16	1.92
560140--560229	42	2.1	42	87	4	128	28	22	21	27	1.99
561264--561346	37	2.2	37	100	0	166	57	7	2	32	1.39
566469--566626	34	4.6	34	75	7	149	29	20	8	40	1.83
566492--566621	68	1.9	69	91	1	217	27	20	10	41	1.85
568862--569022	60	2.7	60	85	0	187	39	3	24	32	1.71
577940--577975	17	2.1	17	94	0	63	25	0	13	61	1.33
589831--589979	76	2.0	76	86	5	212	28	2	9	59	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
589858--590008	76	2.0	77	86	3	216	27	1	9	60	1.40
590646--590686	21	1.9	22	90	5	66	19	4	0	75	0.98
590722--590758	15	2.4	15	90	4	56	35	2	0	62	1.10
596354--596397	22	2.1	21	83	8	54	13	2	4	79	0.98
599493--599537	21	2.1	21	87	0	63	15	20	31	33	1.93
600591--600647	15	3.7	15	81	9	78	21	35	28	15	1.94
600591--600659	15	4.3	16	78	10	61	21	33	27	17	1.96
600591--600659	32	2.2	32	94	0	120	21	33	27	17	1.96
601716--601863	76	2.0	75	87	4	217	29	2	10	58	1.45
601828--601962	64	2.1	64	82	10	161	25	0	17	55	1.47
602526--602573	23	2.2	23	88	7	73	22	2	0	75	0.91
603773--603810	18	2.1	18	90	0	58	28	5	2	63	1.30
616639--616691	22	2.4	22	87	9	72	79	5	0	15	0.91
616624--616689	19	3.3	19	78	8	60	75	7	1	15	1.09
616639--616691	11	5.0	11	76	17	58	79	5	0	15	0.91
617437--617494	23	2.6	23	94	5	102	39	3	12	44	1.58
617508--617542	13	2.8	13	91	4	54	57	0	0	42	0.99
620535--620575	8	5.2	8	82	5	57	34	0	29	36	1.58
620643--621117	124	3.8	125	96	2	875	21	26	19	32	1.97
620643--621117	250	1.9	248	97	0	905	21	26	19	32	1.97
621505--621604	33	3.0	34	83	2	139	39	3	4	54	1.35
622124--622217	21	4.5	21	92	5	129	20	26	35	18	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
622221--622268	21	2.3	21	85	0	60	22	12	39	25	1.89
623998--624054	19	2.7	22	74	20	59	54	1	0	43	1.10
624029--624094	34	1.9	34	82	11	82	63	6	0	30	1.18
625465--625489	12	2.1	12	100	0	50	52	0	0	48	1.00
627680--627747	31	2.2	31	91	0	109	25	32	13	29	1.93
629394--629472	31	2.5	32	87	4	124	34	15	27	22	1.94
630224--630302	39	2.1	39	83	9	101	49	2	2	45	1.29
639484--639508	5	5.0	5	100	0	50	0	0	20	80	0.72
641398--641471	31	2.4	31	86	2	114	40	2	6	50	1.43
644290--644318	2	14.5	2	100	0	58	48	0	51	0	1.00

Tables:   1   2   3

The End!