genome.fa.s9637.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009637.1 Hibiscus syriacus cultivar Beakdansim tig00117046_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  867493

Tables:   1   2   3   4   

This is table  2  of  4  ( 477 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
253606--253630	3	8.3	3	100	0	50	0	0	64	36	0.94
255191--255231	12	3.5	12	96	3	75	19	21	9	48	1.77
272874--272913	17	2.4	17	86	0	53	35	15	10	40	1.80
275141--275183	18	2.4	18	96	0	77	25	9	23	41	1.84
276519--276564	18	2.6	18	89	6	67	45	13	6	34	1.69
276620--276661	17	2.5	17	84	0	57	42	9	14	33	1.78
278524--278869	37	9.4	37	74	15	222	45	5	4	44	1.45
278524--278826	37	8.3	35	76	16	237	46	4	3	44	1.43
278628--278690	27	2.3	27	86	5	83	49	6	3	41	1.44
278584--278716	65	2.0	65	85	7	180	48	5	3	42	1.43
279481--279678	108	1.8	108	95	0	360	42	11	7	38	1.68
287881--287996	23	5.0	23	90	0	151	31	25	22	20	1.98
287875--287996	46	2.7	46	87	2	176	31	26	21	20	1.98
288724--288778	20	2.8	20	97	0	101	30	23	10	34	1.89
288852--288902	20	2.5	20	100	0	102	21	25	13	39	1.90
294124--294229	23	4.7	23	85	9	139	30	26	21	21	1.99
294132--294229	46	2.2	45	89	8	155	29	26	21	22	1.99
297043--297091	3	16.7	3	82	4	64	32	4	2	61	1.26
301706--301745	21	2.0	20	90	5	62	17	22	15	45	1.85
303017--303046	12	2.6	11	90	10	51	73	10	10	6	1.25
304226--304263	4	10.0	4	88	11	62	50	26	0	23	1.50
304226--304275	22	2.5	20	84	12	66	50	24	2	24	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
304222--304271	26	2.0	25	92	4	82	50	24	2	24	1.60
304731--304965	101	2.3	101	82	8	282	31	19	12	37	1.88
304911--305029	36	3.4	34	79	6	114	30	20	12	36	1.90
304929--305030	36	2.9	36	82	4	129	33	19	11	35	1.88
305263--305320	27	2.2	27	81	6	66	34	6	17	41	1.76
305277--305363	27	3.2	26	81	14	95	33	9	14	42	1.78
305401--305516	29	4.1	28	89	5	164	30	10	15	43	1.80
305393--305502	29	3.8	29	89	6	170	30	10	14	44	1.79
305393--305516	56	2.2	59	84	7	175	29	10	15	44	1.80
305489--305539	24	2.1	24	85	7	68	27	7	15	49	1.72
305513--305714	66	3.1	65	88	4	277	32	11	11	45	1.76
305568--305749	66	2.7	65	85	9	226	32	11	9	45	1.73
305827--306049	120	1.9	118	81	7	272	30	14	12	42	1.83
305948--306073	63	2.0	63	89	1	191	31	14	11	42	1.80
306689--306767	28	2.7	28	83	16	99	26	15	12	45	1.82
306723--306777	28	2.0	28	88	0	83	30	14	10	43	1.80
306724--306785	28	2.2	28	85	0	79	32	17	11	38	1.85
306790--307263	130	3.6	131	81	5	573	27	31	18	23	1.97
306795--307277	264	1.8	263	89	3	765	26	31	18	23	1.97
307466--307514	3	16.7	3	82	4	64	32	4	2	61	1.26
311483--311519	19	1.9	19	88	0	56	5	13	0	81	0.86
315871--315960	21	4.3	21	75	0	81	23	11	23	42	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
315972--316029	21	2.8	21	83	0	80	20	20	27	31	1.98
321569--321626	21	2.8	21	72	0	62	25	12	22	39	1.89
321640--321686	21	2.3	21	88	3	69	19	21	25	34	1.96
321652--321710	21	2.9	21	90	5	86	18	23	23	33	1.97
331026--331072	24	2.0	24	91	0	76	46	0	0	53	1.00
333646--333695	23	2.2	23	85	7	66	40	10	18	32	1.83
333655--333702	23	2.2	21	89	10	71	35	8	22	33	1.84
333742--333786	23	2.0	23	81	0	54	40	6	15	37	1.74
333628--333864	87	2.8	86	88	1	343	42	9	15	32	1.78
333917--333989	14	5.3	14	69	8	51	47	1	1	49	1.18
333917--333985	28	2.5	28	74	6	70	49	1	1	47	1.19
334004--334072	24	2.9	25	79	18	76	43	1	2	52	1.25
334420--334468	20	2.5	20	90	3	73	63	12	12	12	1.53
334445--334739	92	3.2	92	93	1	486	44	13	13	28	1.81
337823--338537	184	3.9	184	96	0	1308	33	16	13	35	1.89
339557--339643	32	2.7	33	83	7	115	5	41	0	52	1.25
339830--339895	33	2.0	33	93	0	114	22	46	0	30	1.52
339929--339991	21	3.0	21	92	0	99	17	30	11	41	1.84
340076--340108	15	2.2	15	94	0	57	9	63	9	18	1.49
341794--341840	20	2.4	19	79	10	58	21	17	8	53	1.70
341976--342022	20	2.4	19	82	10	67	19	17	10	53	1.72
341761--342234	182	2.6	180	92	1	750	26	16	14	42	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
342701--342749	24	2.0	24	84	7	64	55	8	8	28	1.58
342822--342861	20	2.0	20	100	0	80	15	30	5	50	1.65
347345--347375	15	2.1	15	93	0	53	9	19	38	32	1.84
347862--347903	17	2.5	18	85	11	54	30	0	0	69	0.89
349712--349798	23	3.7	23	74	17	88	20	26	26	26	1.99
352041--352104	31	2.1	31	100	0	128	46	6	23	23	1.74
364163--364270	58	1.9	58	83	11	143	24	2	11	62	1.42
364207--364255	13	3.6	13	81	8	62	26	2	14	57	1.48
367888--367919	15	2.1	15	94	0	55	37	3	34	25	1.72
368320--368362	21	2.0	21	86	0	59	39	4	0	55	1.20
369003--369062	28	2.1	28	87	0	84	40	8	5	46	1.56
370106--370181	33	2.3	33	97	0	143	47	7	2	42	1.46
374240--374327	45	2.0	44	95	2	158	13	20	14	51	1.76
383801--383843	18	2.5	17	85	7	61	67	2	4	25	1.22
384201--384305	37	2.8	37	83	0	129	29	13	14	42	1.83
384848--385472	105	6.0	105	91	2	929	21	17	26	33	1.96
385678--385753	36	2.1	36	90	0	116	40	15	21	22	1.90
385653--385866	104	2.1	101	91	2	338	35	11	21	30	1.89
385991--386098	36	3.0	36	72	2	101	43	13	14	27	1.84
385953--386113	72	2.2	74	83	8	204	40	12	18	28	1.87
387247--387783	183	2.9	183	96	0	977	30	21	20	26	1.98
391818--391873	21	2.7	21	88	0	76	55	1	1	41	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
391819--391852	2	17.5	2	93	6	61	52	0	0	47	1.00
392277--392313	19	2.0	18	89	5	56	67	0	2	29	1.04
392349--392391	18	2.5	17	85	7	61	67	2	4	25	1.22
392265--392392	60	2.1	60	79	16	140	62	1	2	33	1.17
392267--392399	66	2.1	64	79	13	141	60	3	2	33	1.24
400823--401147	160	2.0	164	97	2	622	38	14	17	29	1.89
405981--406034	18	3.0	18	91	0	90	35	7	3	53	1.47
406389--406480	42	2.1	44	86	9	127	34	25	13	27	1.92
408661--408772	35	3.2	36	87	3	165	25	36	5	32	1.79
412832--412856	13	1.9	13	100	0	50	8	0	20	72	1.10
412953--412984	15	2.0	17	88	11	50	50	6	12	31	1.65
413590--413636	20	2.3	20	92	0	76	36	6	8	48	1.59
415803--415834	15	2.0	17	88	11	50	31	15	6	46	1.71
415929--415969	20	2.1	20	86	4	57	82	2	7	7	0.91
415939--415991	18	2.9	18	73	18	56	79	5	3	11	1.03
417711--417745	18	1.9	18	88	0	52	68	8	11	11	1.39
418312--418358	24	1.9	25	86	4	69	65	2	6	25	1.27
419758--421687	961	2.0	966	93	4	3343	42	5	18	33	1.73
421938--422011	18	3.9	18	91	5	103	18	20	32	28	1.96
423117--423161	21	2.1	21	95	0	81	28	17	4	48	1.66
423253--423287	17	2.2	15	90	10	52	45	0	0	54	0.99
424596--424682	30	3.0	29	78	9	106	37	5	0	56	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
426066--426103	17	2.2	17	100	0	76	23	31	5	39	1.77
426178--426229	28	2.0	28	82	17	67	38	5	3	51	1.44
427235--427348	54	2.2	50	84	6	138	38	15	16	28	1.90
438844--438888	21	2.1	22	83	4	56	35	31	15	17	1.92
439115--439178	20	3.4	19	72	24	64	26	25	20	28	1.99
439214--439253	20	2.0	20	85	9	55	25	22	20	32	1.98
439362--439401	20	1.9	22	90	10	66	37	40	10	12	1.77
439624--439687	33	1.9	33	87	6	94	34	17	23	25	1.96
441521--441623	43	2.4	44	75	6	111	39	17	17	25	1.91
441555--441734	43	4.2	43	83	6	213	33	21	21	24	1.97

Tables:   1   2   3   4