genome.fa.s9638.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009638.1 Hibiscus syriacus cultivar Beakdansim tig00117047_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  894601

Tables:   1   2   3   4   

This is table  3  of  4  ( 386 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
568715--568757	11	3.8	11	78	6	50	13	11	2	72	1.22
568715--568758	23	1.9	23	95	0	79	13	11	2	72	1.21
578821--578902	28	2.9	28	73	22	73	51	2	0	46	1.14
578896--578940	14	3.2	14	83	0	63	48	0	0	51	1.00
579061--579099	19	2.1	19	85	9	53	48	0	2	48	1.15
579363--579469	30	3.6	30	82	1	117	41	9	5	43	1.60
579659--579738	32	2.5	33	80	11	85	37	3	0	58	1.16
579695--579752	28	2.0	30	83	12	77	41	1	0	56	1.09
580791--580822	12	2.4	14	85	15	50	75	0	0	25	0.81
580795--580824	13	2.4	13	94	5	53	73	0	0	26	0.84
591487--591512	2	13.0	2	100	0	52	50	0	0	50	1.00
593643--593672	15	2.1	14	93	6	51	3	0	6	90	0.56
602589--602635	24	2.0	24	83	8	60	57	12	2	27	1.47
605203--605260	23	2.5	23	91	0	89	25	25	27	20	1.99
605279--605599	103	3.1	103	97	0	597	36	23	13	26	1.92
607138--607182	21	2.1	21	87	0	63	15	24	28	31	1.96
610271--610329	6	9.8	6	88	0	73	42	15	6	35	1.73
610406--611385	6	167.0	6	95	4	1797	50	16	0	33	1.46
610198--610474	145	1.9	145	89	0	428	40	13	10	36	1.78
611384--611486	6	16.8	6	94	4	152	37	50	11	0	1.39
611383--611495	14	8.1	14	80	0	109	39	48	10	0	1.44
611459--611501	8	5.4	8	94	0	50	51	41	0	6	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
612922--612951	2	15.0	2	100	0	60	50	0	0	50	1.00
614523--614555	18	1.9	17	88	11	50	51	15	3	30	1.58
621693--621766	30	2.5	29	80	8	87	37	14	10	36	1.82
621850--621952	29	3.5	29	81	2	107	40	11	9	37	1.75
621875--621952	30	2.7	30	84	4	106	42	10	11	35	1.75
637929--638004	29	2.5	31	85	4	93	23	18	6	51	1.69
643207--643255	23	2.1	23	85	7	64	65	2	2	30	1.15
643205--643263	24	2.4	25	81	13	70	61	3	1	33	1.23
655047--655102	17	3.4	17	92	5	96	17	41	25	16	1.89
655093--655149	7	8.4	7	78	7	64	17	24	28	29	1.97
655093--655142	13	3.8	13	97	2	91	16	24	30	30	1.96
655093--655150	20	2.9	21	79	7	66	17	24	27	31	1.97
655467--655545	26	3.2	26	64	29	71	35	7	16	40	1.77
655451--655551	49	2.1	49	98	0	193	34	8	17	38	1.81
661859--661910	19	2.7	19	87	3	68	19	25	28	26	1.98
661859--661908	10	5.1	10	74	13	50	20	22	30	28	1.98
661904--661944	17	2.4	17	87	0	64	19	41	21	17	1.90
661934--661970	7	5.4	7	87	6	58	16	27	29	27	1.97
661934--661971	20	1.9	20	100	0	76	15	26	28	28	1.96
663806--663842	2	18.5	2	100	0	74	51	0	0	48	1.00
668148--668221	12	5.1	15	67	25	52	45	0	1	52	1.09
668154--668265	27	4.0	28	77	11	97	44	0	2	52	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
677743--677767	6	4.2	6	100	0	50	48	20	32	0	1.50
681535--681567	14	2.4	14	94	0	57	6	30	39	24	1.79
689911--689935	6	4.2	6	100	0	50	48	0	52	0	1.00
693629--693680	15	3.5	15	84	5	61	34	5	21	38	1.77
693663--693712	20	2.5	20	100	0	100	40	10	16	34	1.81
693910--694052	28	5.0	28	71	21	93	51	2	2	44	1.25
694026--694071	10	4.5	10	78	21	51	58	0	0	41	0.98
694002--694072	32	2.1	34	87	10	103	53	0	1	45	1.09
694027--694083	22	2.6	22	84	10	73	54	0	0	45	0.99
694034--694083	21	2.3	21	86	10	66	54	0	0	46	1.00
694272--694391	42	2.9	42	97	0	222	44	19	20	16	1.87
695013--695052	18	2.2	18	100	0	80	37	30	5	27	1.78
708976--709045	17	4.1	17	79	1	68	42	5	12	38	1.67
717703--718070	134	2.7	134	90	2	578	25	6	26	42	1.78
719492--719531	19	2.1	19	100	0	80	20	37	0	42	1.52
742190--742401	101	2.1	98	87	6	302	34	5	7	52	1.51
748165--748193	12	2.4	12	100	0	58	37	17	34	10	1.84
750011--750141	30	4.3	30	66	17	74	57	18	4	19	1.58
753671--753871	102	2.0	101	90	2	314	49	8	11	30	1.69
757374--757407	2	17.0	2	100	0	68	50	0	0	50	1.00
758194--758262	3	23.0	3	100	0	138	66	0	0	33	0.92
761954--762013	31	2.0	30	87	9	86	31	18	20	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
763807--763895	40	2.2	40	88	7	128	26	7	22	42	1.81
765414--765633	103	2.1	104	83	2	264	39	12	13	34	1.83
772383--772408	11	2.4	11	100	0	52	84	7	0	7	0.77
772566--772637	32	2.2	32	85	7	92	40	12	4	43	1.62
775080--775167	29	3.0	29	96	0	158	14	29	36	19	1.92
775372--775429	20	2.9	20	89	0	98	27	36	24	12	1.91
775416--775474	23	2.6	23	91	0	100	25	27	33	13	1.93
775372--775518	10	13.8	10	67	12	69	26	29	32	11	1.91
775440--775522	33	2.5	33	94	0	139	26	25	39	8	1.84
775555--775639	33	2.6	33	90	0	125	8	36	28	27	1.85
775559--775615	10	5.4	10	74	12	51	7	40	26	26	1.81
775626--775653	14	2.0	14	100	0	56	7	28	42	21	1.79
776493--776692	43	4.7	43	77	7	156	26	16	23	34	1.95
777112--777165	21	2.6	21	75	0	54	1	31	24	42	1.65
785832--785883	18	2.9	18	88	0	77	19	15	42	23	1.89
786089--786213	42	3.0	42	83	5	137	32	22	16	28	1.95
786896--787057	41	3.9	41	89	1	252	28	19	16	35	1.93
786896--787056	83	1.9	83	92	0	268	28	19	16	36	1.93
786896--787098	83	2.4	83	85	4	259	29	17	17	34	1.93
787086--787224	42	3.3	41	79	10	174	20	22	20	36	1.95
796873--800370	583	6.0	584	99	0	6938	37	18	15	28	1.91
801864--801889	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
806394--806451	29	2.0	29	96	0	107	20	12	34	32	1.90
807522--807552	2	15.0	2	93	6	53	48	0	3	48	1.17
808830--808861	2	16.0	2	100	0	64	50	0	0	50	1.00
813500--813566	31	2.2	31	86	0	89	34	8	14	41	1.78
815126--815219	44	2.1	44	78	3	100	44	5	15	34	1.70
816302--816395	45	2.1	45	100	0	188	35	8	36	20	1.83
816930--816968	2	19.5	2	100	0	78	48	0	0	51	1.00
819179--819381	42	4.9	41	79	6	205	32	19	22	26	1.97
819140--819339	82	2.4	83	80	5	208	28	20	23	28	1.99
820889--820917	13	2.1	14	93	6	51	65	6	13	13	1.45
823390--823424	16	2.1	18	89	10	56	65	0	8	25	1.21
823532--823597	2	33.5	2	90	3	107	54	0	0	45	0.99
823532--823628	16	5.8	17	79	12	87	57	3	0	39	1.14
823582--823640	31	1.9	31	86	3	84	62	5	1	30	1.26
824643--825821	105	11.3	105	90	3	1697	22	18	26	33	1.96
824643--825821	205	5.7	206	92	2	1761	22	18	26	33	1.96
824643--825821	310	3.8	311	90	4	1682	22	18	26	33	1.96
826425--826608	65	2.8	66	82	4	219	37	8	22	31	1.84
826557--826773	36	6.0	36	87	2	319	41	14	19	24	1.89
827254--827289	18	2.0	18	88	0	54	41	30	8	19	1.81
827705--827755	22	2.3	22	96	0	93	25	11	27	35	1.91
828364--828434	7	9.9	7	74	17	56	1	12	5	80	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
828382--828434	23	2.4	23	90	6	83	0	13	5	81	0.86
828402--828448	15	3.1	16	79	17	55	0	17	6	76	0.98
828365--828443	22	3.7	21	80	12	81	1	12	6	79	0.97
829593--829628	8	4.6	8	89	6	56	55	13	16	13	1.69
829593--829628	15	2.3	15	90	4	54	55	13	16	13	1.69
831571--831659	20	4.8	19	75	16	80	62	0	7	29	1.23
831713--831761	2	24.5	2	91	0	80	55	0	0	44	0.99
831747--831840	33	2.9	32	81	7	100	60	6	3	29	1.37
832332--832407	30	2.6	30	74	16	77	36	10	13	39	1.79
832519--832559	17	2.4	17	91	0	64	12	21	2	63	1.40

Tables:   1   2   3   4