genome.fa.s9638.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009638.1 Hibiscus syriacus cultivar Beakdansim tig00117047_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  894601

Tables:   1   2   3   4   

This is table  4  of  4  ( 386 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
832563--832600	2	19.5	2	94	5	69	50	0	0	50	1.00
832733--832821	30	3.0	31	86	4	121	50	4	7	37	1.52
833088--833126	19	2.1	19	85	9	53	48	2	0	48	1.15
833158--833210	15	3.5	15	72	7	54	50	3	1	43	1.30
833284--833331	20	2.6	19	81	15	57	52	0	2	45	1.12
833511--833628	41	2.9	40	86	6	139	50	20	4	24	1.65
833579--833604	13	2.0	13	100	0	52	46	7	7	38	1.61
834768--834843	39	2.0	39	84	2	100	50	10	15	23	1.75
836010--836047	15	2.5	15	91	0	58	36	7	26	28	1.84
837048--837083	18	1.9	18	88	5	54	47	0	0	52	1.00
842482--842528	23	2.0	24	95	4	87	2	12	34	51	1.52
844927--845093	60	2.8	59	74	11	160	31	21	5	41	1.77
846583--846635	20	2.7	20	96	0	97	28	30	35	5	1.80
848534--848650	59	2.0	58	90	5	182	37	11	9	41	1.75
848554--848678	59	2.2	58	81	8	141	35	10	11	43	1.75
851940--852430	136	3.6	135	91	1	779	24	22	18	34	1.96
852340--852548	113	1.8	118	85	5	302	24	24	15	35	1.94
853391--853437	13	3.5	13	80	13	60	8	14	0	76	1.01
869305--869609	105	3.0	96	86	11	439	20	17	40	20	1.91
869451--869475	9	2.8	9	100	0	50	8	12	60	20	1.57
869355--869609	105	2.4	105	98	0	485	20	17	40	22	1.92
871689--871759	2	35.0	2	97	2	133	49	0	1	49	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
876691--876815	31	4.0	31	92	2	198	20	19	22	37	1.94
880886--881008	30	4.0	31	91	5	189	20	17	23	38	1.93
880886--881008	61	2.0	61	89	6	187	20	17	23	38	1.93
893656--893736	29	2.8	29	90	5	137	46	17	9	25	1.78

Tables:   1   2   3   4

The End!