genome.fa.s9644.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009644.1 Hibiscus syriacus cultivar Beakdansim tig00117060_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  611714

Tables:   1   2   3   4   

This is table  4  of  4  ( 419 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
549941--549992	21	2.5	21	87	3	70	38	17	25	19	1.93
549941--550136	41	4.8	40	72	12	148	34	17	21	26	1.95
550043--550154	20	5.6	20	86	4	145	36	19	21	22	1.95
549941--550134	61	3.2	61	74	7	180	34	17	22	25	1.96
549923--550114	102	1.9	102	83	4	253	32	18	21	27	1.97
550716--550828	19	6.1	19	73	13	92	14	22	19	44	1.86
552911--552999	42	2.1	42	78	0	97	22	38	15	23	1.93
554382--554408	14	1.9	14	100	0	54	37	0	25	37	1.57
554488--554546	19	3.4	19	71	22	65	45	18	20	15	1.85
554488--554568	33	2.5	33	93	0	135	44	19	22	13	1.86
554577--554703	33	3.8	33	82	8	177	18	22	16	41	1.90
556474--556516	22	2.0	21	86	8	61	20	39	23	16	1.92
562336--562391	21	2.7	21	83	2	69	23	35	26	14	1.93
566502--566526	12	2.1	12	100	0	50	0	28	0	72	0.86
566713--566759	24	2.0	24	91	0	76	34	17	19	29	1.94
566717--566768	24	2.2	24	82	0	59	36	19	17	26	1.94
567498--567548	20	2.5	20	100	0	102	29	19	31	19	1.97
567766--567824	19	3.4	18	73	22	63	47	18	18	15	1.83
567784--567852	14	4.6	14	76	16	57	43	20	24	11	1.85
567766--567838	33	2.2	33	92	0	119	45	19	21	13	1.85
567784--567873	47	1.9	47	88	4	137	45	20	23	11	1.82
567874--567917	18	2.4	19	84	7	63	15	15	20	47	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
567901--568000	19	5.8	19	70	21	85	12	23	19	46	1.83
567925--568013	14	5.6	14	69	23	61	12	24	19	43	1.85
567906--568013	33	3.3	33	96	0	198	12	24	19	44	1.84
570020--570087	20	3.5	19	82	6	82	38	23	23	14	1.92
570076--570134	14	3.9	14	76	20	64	50	23	16	8	1.72
570060--570139	33	2.4	33	95	0	142	48	22	18	10	1.77
570146--570262	19	6.6	19	69	21	76	14	20	21	43	1.87
570168--570226	14	3.9	14	76	20	64	11	16	23	47	1.80
570151--570242	33	2.8	33	91	3	150	13	17	21	47	1.81
572127--572185	20	3.0	20	87	0	73	42	22	18	16	1.89
572449--572492	22	2.0	22	95	0	79	18	15	45	20	1.85
572681--572732	20	2.6	20	90	0	77	25	21	26	26	1.99
572741--572794	20	2.7	20	97	0	99	25	18	24	31	1.97
572660--572797	61	2.3	61	84	0	186	23	17	23	35	1.95
572911--572956	19	2.3	20	81	7	58	26	17	28	28	1.98
573693--573743	24	2.1	24	96	0	93	21	25	0	52	1.47
580953--581000	23	2.1	23	92	0	78	27	12	20	39	1.89
588280--588504	36	6.3	35	83	8	114	46	5	3	44	1.41
588308--588623	36	8.6	35	83	11	318	43	6	3	46	1.45
588283--588638	37	9.8	36	79	14	233	44	5	3	46	1.43
588651--588680	2	15.5	2	93	6	53	50	0	0	50	1.00
588569--588714	45	3.1	47	87	7	183	46	7	2	43	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
588664--588809	36	4.0	35	76	17	102	44	8	2	43	1.49
588703--588811	38	2.9	37	83	11	118	44	8	2	44	1.48
588664--588811	38	3.9	38	76	9	117	45	8	2	43	1.49
588825--588857	2	16.5	2	100	0	66	51	0	0	48	1.00
589876--590075	47	4.3	47	80	8	230	27	22	18	32	1.97
589855--590040	91	2.0	91	90	0	291	28	23	18	30	1.97
589855--590161	47	6.9	44	72	17	165	29	23	16	30	1.97
589980--590060	26	3.3	26	68	16	73	27	14	22	35	1.93
596441--596508	30	2.3	30	84	0	82	42	19	5	32	1.75
604555--604630	38	2.0	38	86	0	107	22	35	19	22	1.96
604565--604655	38	2.3	38	84	3	110	23	34	19	23	1.97
604632--604705	23	3.2	23	66	9	60	29	33	14	21	1.94
605940--606007	32	2.1	32	100	0	136	42	11	11	33	1.78
608057--608114	29	2.0	30	93	3	100	29	8	3	58	1.44
609892--609927	2	18.5	2	94	5	65	50	0	0	50	1.00

Tables:   1   2   3   4

The End!