genome.fa.s9645.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009645.1 Hibiscus syriacus cultivar Beakdansim tig00117063_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1081801

Tables:   1   2   3   4   

This is table  1  of  4  ( 446 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3489--3549	10	6.3	9	76	10	50	16	27	29	26	1.97
4491--4567	31	2.5	31	78	2	82	15	27	29	27	1.96
4491--4614	63	2.0	63	80	6	144	17	28	28	25	1.98
6543--6599	26	2.2	26	87	0	78	19	14	1	64	1.36
6534--6600	26	2.5	28	75	9	75	17	13	2	65	1.38
15260--15349	39	2.4	37	83	5	110	24	37	15	22	1.93
17983--18031	23	2.2	23	82	7	57	51	4	2	42	1.32
17981--18029	21	2.3	20	80	13	53	53	4	2	40	1.32
24571--24873	121	2.5	122	83	5	368	28	14	10	46	1.77
27688--27715	12	2.3	12	100	0	56	7	14	14	64	1.48
30234--30272	20	2.0	20	89	0	60	28	2	30	38	1.70
38253--38326	37	2.0	37	84	5	96	50	1	4	44	1.29
38472--38509	20	1.9	20	84	10	51	21	23	10	44	1.83
43332--43364	16	2.1	16	94	0	57	45	0	12	42	1.41
43853--43926	29	2.6	29	84	6	105	25	5	6	62	1.42
43915--44057	74	1.9	74	87	2	207	34	5	3	55	1.40
44385--44424	20	2.0	20	85	5	53	57	0	2	40	1.12
45619--45663	20	2.2	20	96	0	81	35	13	24	26	1.92
71551--71602	22	2.4	21	75	12	52	26	1	3	67	1.18
73277--73396	60	2.1	58	84	7	154	49	11	10	29	1.72
80642--80982	170	2.0	171	98	1	659	35	17	15	31	1.91
85515--85679	84	2.0	84	90	0	258	35	24	22	17	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87416--87468	26	2.0	26	85	10	72	18	0	39	41	1.51
88476--88514	19	2.0	21	90	10	64	46	0	5	48	1.24
90204--90244	14	2.9	14	88	0	64	48	0	0	51	1.00
91943--92136	66	2.9	65	83	6	221	32	17	24	25	1.96
99330--99363	15	2.3	15	90	10	52	61	23	2	11	1.43
101634--101714	31	2.6	31	88	0	117	45	4	7	41	1.53
101882--101917	2	18.0	2	100	0	72	50	0	0	50	1.00
102410--102495	15	5.6	15	70	22	54	54	1	1	43	1.15
102469--102505	14	2.6	15	83	8	51	59	0	0	40	0.97
115404--115460	26	2.1	27	84	9	73	45	14	17	22	1.84
115530--115573	12	3.4	12	77	17	52	50	18	20	11	1.77
120477--120516	21	1.9	21	89	0	62	32	15	7	45	1.74
120511--120609	33	3.0	32	91	4	153	33	7	14	45	1.71
120595--120649	13	4.2	13	75	13	58	34	3	12	49	1.59
120845--120901	21	2.7	21	91	0	96	19	26	26	28	1.99
121067--121122	15	3.6	15	79	9	67	32	12	12	42	1.80
121086--121119	18	1.9	18	94	5	61	38	11	11	38	1.79
121197--121228	16	2.0	17	88	11	50	43	21	21	12	1.86
148069--148106	15	2.3	18	86	13	55	47	0	0	52	1.00
148061--148108	18	2.6	18	78	21	55	52	0	0	47	1.00
149140--149183	22	2.0	22	86	8	63	36	0	20	43	1.52
150734--150819	35	2.5	35	86	3	111	33	13	11	40	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
150734--150819	17	4.9	17	84	5	109	33	13	11	40	1.81
159201--159258	25	2.3	25	96	0	107	58	10	22	8	1.58
159201--159249	11	4.1	12	82	17	66	59	8	24	8	1.54
159201--159259	14	4.6	14	80	17	67	59	10	22	8	1.56
162127--162196	31	2.2	31	97	2	131	37	17	21	24	1.94
164698--164752	22	2.5	22	82	8	67	45	1	0	52	1.11
173550--173609	31	1.9	31	93	0	102	35	8	18	38	1.81
179862--179914	21	2.5	21	81	0	70	20	22	18	37	1.94
181670--181780	42	2.6	41	75	8	107	23	18	36	21	1.95
182261--182309	20	2.5	20	100	0	98	38	26	20	14	1.91
182352--182400	20	2.5	20	82	0	62	20	18	24	36	1.94
182326--182487	87	1.9	87	90	0	261	17	19	19	43	1.88
182374--182464	33	2.7	34	75	3	103	13	18	21	46	1.83
182439--182490	20	2.6	20	90	0	86	19	19	23	38	1.93
184363--184452	20	4.6	20	83	1	92	46	22	16	14	1.83
185028--185109	20	4.1	20	100	0	164	20	19	20	39	1.93
185106--185151	21	2.2	21	92	0	74	39	17	26	17	1.91
186562--186640	31	2.5	31	89	0	122	40	15	10	34	1.81
188690--188883	73	2.7	73	83	3	241	24	13	14	47	1.80
198693--198721	4	7.2	4	100	0	58	75	0	0	24	0.80
201704--201779	38	2.0	38	100	0	152	28	23	18	28	1.98
204845--204933	29	3.0	29	67	12	72	46	4	17	31	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
210646--210719	37	2.0	36	82	10	87	48	1	4	45	1.29
214059--214084	3	8.7	3	100	0	52	0	0	30	69	0.89
216950--216999	14	3.6	14	79	12	59	34	0	0	66	0.92
217373--217429	21	2.5	22	81	15	71	38	8	0	52	1.33
217385--217445	25	2.3	28	81	13	85	40	4	1	52	1.33
229442--229510	19	3.6	18	71	21	52	49	1	1	47	1.19
229393--229490	27	3.6	27	71	15	76	47	1	1	50	1.14
229505--229549	23	2.0	23	81	0	54	51	2	2	44	1.26
239405--239519	49	2.3	49	90	4	176	20	13	26	38	1.91
239424--239523	49	2.0	49	98	0	191	21	16	25	38	1.93
240334--240386	14	3.9	14	80	5	72	67	18	3	9	1.33
245747--245802	27	2.1	27	89	0	85	33	25	12	28	1.92
249022--249057	18	2.0	18	94	0	63	27	8	5	58	1.50
258256--258310	2	29.5	2	76	20	57	50	0	1	47	1.11
258253--258319	32	2.1	31	94	2	116	50	0	2	46	1.16
260525--260638	57	2.0	57	94	0	201	21	28	16	34	1.95
265026--265059	15	2.3	15	89	0	50	50	29	0	20	1.49
271796--271872	29	2.6	30	81	6	84	44	9	18	28	1.80
277537--277722	60	3.1	60	81	4	200	31	24	4	39	1.76
299895--299927	2	17.0	2	93	6	59	48	0	0	51	1.00
303997--304060	27	2.5	26	82	7	78	18	28	28	25	1.98
304023--304224	30	6.4	30	76	17	141	12	27	28	31	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
304087--304194	36	2.9	36	88	10	164	11	28	28	31	1.91
304080--304194	39	3.0	38	90	8	173	10	29	28	31	1.90
303999--304128	30	4.5	28	74	15	113	13	26	28	30	1.94
304159--304227	24	2.7	26	78	15	81	11	30	27	30	1.92
308726--308750	13	1.9	13	100	0	50	40	24	0	36	1.55
308733--308775	21	2.1	20	91	4	68	44	25	0	30	1.55
311329--311421	46	2.0	46	85	4	125	20	13	25	39	1.90
312783--312830	24	2.0	25	87	4	71	41	4	12	41	1.62
314648--314705	26	2.3	25	82	11	66	56	3	1	37	1.26
315280--316515	84	15.1	82	76	7	1057	24	19	25	30	1.98
315280--316480	248	4.9	248	92	1	1997	24	19	25	29	1.98
319470--319500	11	2.7	12	95	5	55	83	0	0	16	0.64
321014--321076	19	3.3	19	77	16	60	52	1	1	44	1.20
321009--321066	26	2.3	25	82	11	66	56	1	1	39	1.19
323605--323658	16	3.4	16	89	0	81	37	20	27	14	1.92
323611--323656	9	5.6	9	75	19	55	34	21	28	15	1.94
328810--328837	9	3.1	9	100	0	56	0	57	0	42	0.99
332997--333022	9	2.9	9	100	0	52	0	0	11	88	0.52
339286--339352	33	2.0	33	97	0	125	28	8	8	53	1.62
339427--339503	38	2.1	37	90	4	120	36	25	16	20	1.94
346932--346965	17	1.9	18	88	5	52	52	2	2	41	1.31
349296--349359	23	2.8	23	87	0	83	26	21	17	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
350929--350977	20	2.4	21	75	6	55	38	8	20	32	1.82
351511--351550	19	2.0	20	95	4	73	70	0	0	30	0.88
352477--352517	18	2.3	18	95	0	73	19	17	14	48	1.81
354527--354574	22	2.1	23	88	3	71	37	14	8	39	1.76
354641--354676	13	2.8	13	86	0	54	44	5	0	50	1.25
373957--374127	89	1.9	89	83	7	222	40	11	8	40	1.70
374574--374599	7	3.7	7	100	0	52	30	26	42	0	1.56
374805--374830	7	3.7	7	100	0	52	30	26	42	0	1.56
381938--382377	219	2.0	219	99	0	871	30	14	28	26	1.95
392924--392963	21	2.0	20	85	5	53	37	0	12	50	1.41

Tables:   1   2   3   4