genome.fa.s9645.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009645.1 Hibiscus syriacus cultivar Beakdansim tig00117063_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1081801

Tables:   1   2   3   4   

This is table  4  of  4  ( 446 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
849275--849337	23	2.7	23	92	0	99	38	20	4	36	1.74
849751--849813	22	2.8	23	90	4	101	36	22	4	36	1.75
848871--853171	478	9.0	482	95	3	7731	40	11	7	40	1.69
850229--850291	23	2.7	23	92	0	99	38	20	4	36	1.74
850717--850779	23	2.7	23	92	0	99	38	20	4	36	1.74
851195--851257	23	2.7	23	92	0	99	38	20	4	36	1.74
851668--851720	22	2.5	22	87	3	81	35	22	5	35	1.78
852092--852130	20	2.0	20	89	0	60	48	10	15	25	1.76
852135--852197	23	2.7	23	92	0	99	38	20	4	36	1.74
852609--852663	23	2.4	23	93	0	92	38	20	5	36	1.75
853086--853141	23	2.4	23	90	0	94	37	21	5	35	1.76
853171--853811	228	2.8	229	96	0	1187	40	8	7	43	1.63
856480--856525	23	2.0	23	91	0	74	21	23	26	28	1.99
860910--860934	2	12.5	2	100	0	50	52	0	0	48	1.00
875577--875853	140	2.0	140	92	4	465	39	14	10	35	1.80
879109--879239	38	3.5	38	74	3	149	37	21	6	35	1.78
879092--879270	75	2.4	75	95	0	315	38	24	6	31	1.80
879145--879270	37	3.4	37	74	2	144	42	23	3	30	1.72
887389--887541	60	2.5	60	84	0	207	31	9	18	40	1.83
891566--891655	29	3.1	29	93	0	153	38	15	21	24	1.92
893148--893190	20	2.3	18	84	8	50	32	20	0	46	1.51
894753--894782	15	2.0	15	93	0	51	36	6	0	56	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
894943--894975	17	1.9	17	93	0	57	42	0	3	54	1.15
908379--908441	29	2.2	29	77	2	74	57	4	6	31	1.45
914478--914521	19	2.3	20	80	11	56	61	0	2	36	1.09
916741--916798	20	2.7	22	80	17	68	41	1	5	51	1.34
917866--917904	19	2.0	20	90	5	62	46	0	0	53	1.00
922360--922405	21	2.2	21	88	0	65	54	4	8	32	1.51
922368--922416	21	2.3	20	76	10	53	46	6	12	34	1.66
922872--922919	23	2.1	23	100	0	96	47	4	4	43	1.41
926997--927027	2	15.5	2	100	0	62	51	0	0	48	1.00
932245--932310	29	2.3	29	81	5	80	53	9	7	30	1.60
932354--932421	29	2.3	30	82	12	95	60	8	5	25	1.49
933910--933950	17	2.5	16	84	7	55	63	21	9	4	1.44
933496--934008	256	2.0	256	97	0	963	48	14	17	18	1.81
935493--935555	31	2.0	32	84	3	83	47	15	14	22	1.81
939875--939950	34	2.2	35	90	2	118	44	23	0	31	1.54
939875--939969	35	2.7	35	77	4	95	42	27	1	29	1.63
940125--940417	148	2.0	148	94	0	514	36	5	9	47	1.61
940915--940993	34	2.3	35	88	2	115	31	1	24	43	1.62
941620--942075	227	2.0	228	98	1	880	33	19	13	34	1.90
942952--942989	18	2.1	18	100	0	76	52	5	5	36	1.47
943692--943738	22	2.0	25	84	12	64	48	0	2	48	1.13
943909--943959	26	2.0	26	85	7	70	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
943938--944005	21	3.5	21	67	29	60	54	0	0	45	0.99
943933--943997	18	3.6	17	72	27	55	50	0	0	49	1.00
943907--943997	37	2.3	39	85	7	114	47	0	0	52	1.00
943930--944005	37	2.0	38	85	7	102	52	0	0	47	1.00
944238--944268	14	2.2	14	94	0	53	29	6	9	54	1.57
949337--949412	14	5.1	14	76	20	50	76	0	11	11	1.03
956357--956495	69	2.0	69	100	0	278	30	21	31	15	1.95
960075--960184	54	2.1	53	98	1	211	25	18	16	40	1.91
976089--976131	20	2.2	20	83	8	52	53	6	2	37	1.41
976488--976527	21	1.9	21	84	0	53	50	27	12	10	1.72
976508--976547	16	2.6	15	88	4	53	50	30	17	2	1.59
977067--977224	60	2.6	59	79	8	142	40	5	18	35	1.74
977768--977800	13	2.5	14	90	9	52	66	0	0	33	0.92
980060--980114	29	1.9	29	85	3	76	43	23	18	14	1.87
991001--991031	15	2.1	15	93	0	53	38	19	3	38	1.68
997997--998034	18	2.1	18	90	0	58	26	15	36	21	1.93
998971--999006	19	1.9	18	94	5	63	55	0	8	36	1.30
1000899--1000954	25	2.4	25	82	11	66	39	5	3	51	1.42
1006301--1006336	19	1.9	18	94	5	63	55	0	8	36	1.30
1019735--1019772	18	2.1	18	90	0	58	26	15	36	21	1.93
1026356--1026387	6	5.3	6	96	0	55	34	3	0	62	1.11
1026823--1026908	36	2.5	35	79	5	86	30	19	15	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1033824--1033856	5	6.6	5	100	0	66	18	0	0	81	0.68
1053505--1053637	60	2.2	60	80	5	144	44	9	6	39	1.64
1054051--1054091	2	20.5	2	94	0	73	51	46	2	0	1.14
1054091--1054139	2	24.5	2	100	0	98	51	0	0	48	1.00
1057687--1057976	154	1.9	153	86	2	420	38	10	11	39	1.77
1059852--1059881	15	2.0	15	100	0	60	20	26	20	33	1.97
1060715--1061083	156	2.4	155	80	7	419	29	15	7	46	1.74
1061340--1061366	2	13.5	2	100	0	54	48	0	0	51	1.00
1065496--1065632	45	3.3	44	67	24	125	32	11	24	30	1.91
1065540--1065746	34	5.4	34	66	27	87	34	10	23	31	1.89
1065496--1065761	79	3.4	79	90	0	415	34	10	24	30	1.89
1065496--1065792	158	1.9	158	87	0	441	34	10	24	30	1.89
1065496--1065792	79	3.8	79	87	1	398	34	10	24	30	1.89
1066419--1066567	81	1.8	81	88	0	226	37	10	24	27	1.88
1066621--1066677	2	28.5	2	100	0	114	50	0	0	49	1.00
1075728--1075805	25	2.7	30	69	29	78	32	14	5	48	1.65
1075748--1075800	25	2.1	25	96	0	97	26	13	7	52	1.66
1075753--1075806	25	2.2	25	89	0	81	29	16	5	48	1.69
1076417--1076442	2	13.0	2	100	0	52	50	0	0	50	1.00
1078705--1078738	14	2.4	14	100	0	68	50	14	11	23	1.76

Tables:   1   2   3   4

The End!