genome.fa.s9645.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009645.1 Hibiscus syriacus cultivar Beakdansim tig00117063_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1081801

Tables:   1   2   3   4   

This is table  3  of  4  ( 446 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
646266--646298	18	1.9	17	88	11	50	30	24	6	39	1.79
646693--646759	20	3.3	20	79	4	89	41	17	22	17	1.90
646710--646785	21	3.7	21	76	3	91	42	18	23	15	1.89
646774--646888	20	5.7	20	82	6	115	31	26	18	24	1.97
646693--646785	41	2.3	41	98	0	177	40	18	23	17	1.90
646771--646908	41	3.4	41	79	6	154	34	24	17	23	1.96
647077--647120	22	2.0	22	95	0	79	20	45	15	18	1.85
647345--647388	20	2.2	20	87	0	61	11	18	20	50	1.77
648642--648686	18	2.5	18	88	0	72	26	44	15	13	1.83
649194--649249	20	2.8	19	86	7	76	16	25	23	35	1.94
651270--651318	19	2.6	19	96	0	89	51	16	18	14	1.77
651270--651325	19	2.9	19	86	5	78	51	16	19	12	1.75
651356--651428	20	3.6	20	88	7	112	16	21	23	38	1.93
651356--651434	40	2.0	41	90	7	126	18	21	22	36	1.95
652483--652536	24	2.2	24	90	0	81	24	14	20	40	1.90
652710--652734	12	2.1	12	100	0	50	72	0	28	0	0.86
655010--655107	19	5.7	19	67	22	81	42	20	21	15	1.88
655011--655110	33	3.0	33	91	2	157	41	20	21	18	1.91
655103--655145	20	2.2	20	87	4	61	16	18	23	41	1.89
655131--655164	14	2.4	14	85	0	50	8	23	20	47	1.78
655286--655322	14	2.6	14	91	0	65	45	24	0	29	1.53
658460--658516	25	2.3	24	82	8	71	57	21	7	14	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
658607--658705	33	3.0	33	87	1	135	40	26	22	11	1.87
658582--658727	20	8.1	19	70	19	89	43	21	21	12	1.85
659291--659343	20	2.7	20	93	0	88	26	20	28	24	1.99
659352--659405	20	2.7	20	97	0	99	25	18	24	31	1.97
659292--659408	61	1.9	61	85	0	162	23	17	24	33	1.97
659292--659426	61	2.2	61	81	2	155	22	20	24	32	1.98
659476--659516	21	2.0	21	85	0	55	34	31	17	17	1.93
664221--664310	29	3.1	29	73	7	83	50	4	4	41	1.43
665420--665445	5	5.2	5	100	0	52	0	19	57	23	1.40
665461--665551	39	2.5	35	84	12	103	12	19	39	28	1.88
666526--666550	12	2.1	12	100	0	50	48	0	16	36	1.46
670893--670925	16	2.1	16	100	0	66	57	24	12	6	1.57
670991--671064	10	7.6	10	69	22	59	58	21	10	9	1.60
670987--671059	32	2.3	32	93	4	123	58	20	10	9	1.59
670995--671059	16	4.1	16	95	0	121	56	23	12	7	1.61
670998--671066	32	2.2	32	91	0	111	57	21	10	10	1.60
671727--671792	24	2.8	24	88	0	96	57	15	10	16	1.65
671744--671799	14	4.3	14	73	17	66	53	19	12	14	1.72
673431--673483	27	2.0	27	100	0	106	7	22	50	18	1.72
673443--673500	22	2.6	22	94	0	98	10	22	48	18	1.78
673431--673500	22	2.8	26	77	20	85	11	22	47	18	1.81
673438--673483	5	8.8	5	86	9	65	4	21	54	19	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
673497--673581	9	9.1	9	79	7	89	27	29	27	16	1.97
673503--673575	19	3.8	19	92	3	121	26	30	26	17	1.98
680768--680808	5	7.8	5	84	10	55	4	21	53	19	1.63
680760--680819	27	2.3	26	88	5	93	13	23	45	18	1.84
680807--680923	19	6.1	19	83	10	130	28	27	26	17	1.98
680813--680923	29	3.8	29	78	12	63	27	27	27	17	1.97
686280--686379	3	33.7	3	85	2	139	33	2	1	64	1.12
699125--699183	7	8.1	7	75	17	50	79	0	16	3	0.86
699116--699179	34	1.9	32	93	6	110	79	0	17	3	0.85
699117--699181	10	6.1	10	84	10	76	81	0	15	3	0.81
700321--700631	52	6.0	52	93	2	545	23	14	24	37	1.93
700580--700788	83	2.5	83	98	0	400	26	12	21	39	1.89
700748--700850	51	2.0	51	88	3	154	25	15	23	35	1.94
700665--700918	133	1.9	134	93	0	438	26	13	22	37	1.91
700528--701020	216	2.3	217	91	1	774	27	13	21	37	1.90
700799--701122	83	3.9	82	91	1	488	29	12	20	37	1.90
701778--702306	116	4.6	112	90	4	796	37	13	19	29	1.90
702622--702708	3	29.7	3	86	4	124	32	2	1	64	1.13
709509--709557	2	24.5	2	82	0	62	0	59	0	40	0.98
709511--709560	6	8.3	6	97	0	73	0	60	0	40	0.97
712282--712311	15	2.0	15	93	0	51	43	6	23	26	1.78
712409--712470	32	2.0	31	84	9	81	37	3	9	50	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
712408--712458	21	2.4	22	75	15	54	39	3	9	47	1.55
712615--712646	2	16.0	2	100	0	64	50	0	0	50	1.00
720182--720240	22	2.7	22	97	0	109	38	1	5	54	1.33
726988--727013	6	4.3	6	100	0	52	84	15	0	0	0.62
728688--728746	30	2.0	30	100	0	118	37	15	6	40	1.74
729048--729089	17	2.5	17	88	7	59	69	2	4	23	1.20
730455--730500	12	3.8	12	91	0	65	28	19	8	43	1.80
731752--732113	186	2.0	178	85	9	492	41	4	9	45	1.55
733342--733435	31	3.0	31	89	3	136	38	23	18	20	1.93
742139--742201	30	2.1	30	90	0	99	39	4	20	34	1.74
742611--742635	9	2.8	9	100	0	50	36	8	12	44	1.71
743117--743172	20	2.8	20	91	0	85	26	23	17	32	1.97
743115--743181	20	3.3	20	85	4	82	25	23	20	29	1.99
744686--744724	20	2.0	20	89	0	60	28	30	12	28	1.93
745657--745723	33	2.1	30	83	8	80	58	4	4	32	1.38
757182--757390	94	2.2	94	87	0	292	46	22	15	16	1.84
760738--760776	17	2.4	16	86	4	51	56	2	2	38	1.27
770601--770630	16	1.9	15	93	6	51	20	6	0	73	1.05
772546--772571	10	2.6	10	100	0	52	65	0	0	34	0.93
773306--773341	11	3.2	11	88	7	54	27	0	0	72	0.85
773343--773374	3	10.7	3	100	0	64	65	0	0	34	0.93
774300--774351	21	2.5	22	78	15	65	46	17	0	36	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
775123--775215	32	2.9	31	87	1	123	35	5	1	58	1.28
775229--775356	31	3.7	31	70	23	94	51	7	5	35	1.52
783584--783653	34	2.1	34	94	0	122	24	17	8	50	1.74
788382--788535	60	2.6	60	78	5	168	42	6	20	30	1.77
789861--789913	2	26.5	2	100	0	106	49	0	0	50	1.00
797046--797088	17	2.5	17	100	0	86	48	4	4	41	1.44
797635--797659	11	2.3	11	100	0	50	36	0	0	64	0.94
798451--798803	176	2.0	176	98	0	688	17	23	20	38	1.93
800441--800480	21	1.9	21	85	10	55	35	5	2	57	1.34
812468--812815	174	2.0	172	97	2	662	33	7	9	50	1.63
823741--823801	31	2.0	31	81	12	72	37	8	9	44	1.68
824474--824517	20	2.1	21	88	12	65	31	0	6	61	1.22
839908--840151	15	15.9	15	88	6	346	50	0	1	47	1.12
839928--840230	45	6.3	47	85	10	185	46	0	4	48	1.25
840130--840227	32	3.4	32	71	26	117	36	0	11	52	1.38
840153--840195	22	2.0	22	95	0	77	37	0	13	48	1.43
840132--840244	54	2.1	54	98	0	217	35	0	12	52	1.39
840198--840245	22	2.4	18	73	23	51	33	0	14	52	1.42
840237--840944	54	12.9	54	77	14	578	33	0	12	52	1.42
840254--840887	32	20.7	32	68	24	304	34	0	12	52	1.42
840287--840329	22	2.0	22	90	0	68	34	2	11	51	1.51
840175--840944	220	3.5	220	96	0	1396	33	0	13	52	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
840341--840383	22	2.0	22	100	0	86	34	0	13	51	1.42
840372--840425	14	3.6	14	72	18	54	37	0	5	57	1.22
840507--840549	22	2.0	22	100	0	86	34	0	13	51	1.42
840727--840769	22	2.0	22	100	0	86	34	0	13	51	1.42
840749--840944	86	2.4	80	88	8	279	34	0	11	54	1.37
840858--840931	22	3.2	23	72	14	62	29	0	16	54	1.43
840924--840950	14	1.9	14	100	0	54	40	0	0	59	0.98
844157--844229	25	2.8	26	81	12	87	43	4	1	50	1.29
844157--844248	26	3.5	27	81	10	93	43	4	1	51	1.29
844372--844432	31	2.0	31	90	0	95	49	6	11	32	1.65

Tables:   1   2   3   4