genome.fa.s10573.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01010573.1 Kokia drynarioides strain JFW-HI SEQ_125496, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  690509

Tables:   1   2   3   

This is table  2  of  3  ( 333 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
213101--213466	166	2.2	166	95	0	660	30	17	23	28	1.97
223213--223259	22	2.2	21	85	7	60	31	8	12	46	1.72
228493--228543	21	2.4	21	80	6	59	39	25	13	21	1.90
247929--247979	24	2.1	24	88	0	75	25	23	25	25	2.00
250270--250294	5	5.0	5	100	0	50	20	0	0	80	0.72
252733--252795	32	2.0	32	83	0	81	36	11	17	34	1.85
254364--254407	18	2.4	18	85	7	54	40	20	18	20	1.91
259741--259803	32	2.0	32	83	0	81	34	9	15	39	1.80
261476--261502	9	3.0	9	100	0	54	55	33	11	0	1.35
267688--267726	17	2.2	17	86	9	51	69	2	28	0	1.02
267698--267736	17	2.2	18	90	4	62	71	0	28	0	0.86
285485--285514	14	2.2	14	94	5	53	33	13	20	33	1.91
287212--287301	30	3.0	29	83	4	117	28	27	18	24	1.98
306209--306265	24	2.4	24	88	5	80	49	8	5	36	1.57
306417--306480	32	2.0	32	81	6	76	43	7	1	46	1.42
309587--309632	20	2.3	21	81	11	60	34	10	23	30	1.89
309839--309878	20	2.0	20	85	0	53	27	7	32	32	1.85
313887--313922	18	1.9	19	94	5	65	55	5	0	38	1.23
313894--313933	18	2.3	17	83	8	53	50	7	0	42	1.30
327647--327685	19	2.2	19	86	9	55	15	5	5	74	1.17
331718--331758	21	2.0	21	85	9	57	17	12	19	51	1.76
332524--332577	27	2.0	27	81	3	63	44	5	1	48	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
332982--333021	18	2.2	18	100	0	80	27	57	10	5	1.52
343581--343612	15	2.2	14	94	5	55	75	0	25	0	0.81
343575--343612	18	2.1	18	90	0	58	71	0	28	0	0.87
354755--354797	19	2.5	17	79	17	52	13	6	11	67	1.41
361001--361035	18	1.9	18	88	0	52	40	20	17	22	1.92
367121--367175	20	2.7	21	78	16	62	72	0	25	1	0.94
367473--367514	17	2.4	18	80	11	52	64	0	21	14	1.29
367517--367546	2	15.0	2	92	0	51	46	0	3	50	1.18
372658--372692	14	2.4	15	90	4	54	28	14	0	57	1.38
373286--373310	8	3.1	8	100	0	50	24	0	0	76	0.80
383998--384038	14	3.0	14	85	3	57	53	0	24	21	1.46
391747--391810	32	2.0	32	96	0	119	10	6	23	59	1.54
392964--392997	13	2.5	14	85	9	52	8	8	5	76	1.15
397527--397581	23	2.5	22	77	11	58	36	1	0	61	1.06
397960--398034	30	2.7	29	82	15	79	45	1	1	52	1.17
398017--398050	16	2.1	17	88	5	52	47	0	0	52	1.00
404467--404509	18	2.4	18	92	0	68	60	16	9	13	1.58
406067--406102	18	2.0	18	88	0	54	36	0	22	41	1.54
418476--418513	20	2.1	18	85	14	51	36	5	7	50	1.54
418884--419096	109	2.0	107	84	3	275	40	11	12	35	1.80
420882--420926	17	2.4	18	85	10	56	8	2	42	46	1.47
421180--421422	49	4.9	49	74	10	201	23	25	13	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
421178--421422	98	2.5	99	83	4	291	22	25	13	38	1.90
421359--421744	98	3.9	97	81	3	407	22	24	14	38	1.91
421354--421759	49	8.2	48	77	4	359	22	24	14	39	1.91
421359--421749	147	2.7	147	81	5	436	22	24	14	38	1.91
421728--421859	50	2.6	50	77	11	119	18	25	14	41	1.88
421860--422518	99	6.7	98	75	11	519	26	20	17	35	1.95
421873--422521	198	3.3	198	77	8	587	26	21	16	35	1.95
421860--422528	297	2.3	291	81	3	734	26	21	17	35	1.95
422495--422606	40	2.8	40	87	0	161	26	23	11	38	1.89
426586--426798	108	2.0	108	81	7	254	37	12	14	35	1.84
429648--429714	20	3.3	20	75	8	73	13	25	17	43	1.86
429629--429727	40	2.5	40	81	0	135	12	26	20	41	1.87
429706--429772	20	3.5	20	81	8	93	4	28	26	40	1.75
432260--432332	26	2.8	26	89	0	119	28	24	23	23	1.99
432771--432806	16	2.2	16	100	0	72	0	16	0	83	0.65
442131--442210	26	3.1	26	70	13	65	30	21	18	30	1.97
450308--450344	14	2.7	14	88	12	51	16	10	2	70	1.27
450302--450343	20	2.1	20	82	8	50	16	11	2	69	1.29
453277--453322	10	4.9	10	76	12	53	80	0	19	0	0.71
453278--453324	17	2.9	17	82	17	64	80	0	19	0	0.70
457705--457895	96	2.0	97	83	7	246	38	16	17	27	1.91
458179--458580	145	2.8	144	79	7	381	35	3	25	35	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
458144--458515	29	12.9	28	74	9	257	33	3	27	35	1.75
458121--458515	87	4.6	87	75	11	287	34	3	26	34	1.75
458310--458580	29	9.4	29	75	9	184	36	2	23	37	1.69
458420--458592	57	3.0	56	73	13	156	38	2	20	38	1.66
458865--458954	36	2.5	36	94	0	153	27	25	21	25	1.99
460091--460158	17	3.9	17	82	1	73	57	2	2	36	1.29
460637--461142	162	3.1	161	83	7	654	22	22	19	35	1.96
460862--460981	49	2.5	49	84	4	154	22	26	17	33	1.96
460573--461108	172	3.2	170	82	8	682	22	22	19	35	1.96
466459--466498	20	2.0	20	85	0	53	30	20	12	37	1.89
472714--472906	95	2.0	97	86	5	275	38	15	17	29	1.89
473228--473411	29	6.4	28	75	15	137	35	4	27	32	1.78
473371--473462	29	3.2	29	80	10	91	34	3	22	39	1.71
473253--473433	57	3.1	58	74	12	165	36	3	26	33	1.75
473362--473432	28	2.5	27	76	17	72	40	2	22	33	1.69
473391--473605	29	7.5	29	75	8	138	39	3	20	37	1.69
473371--473554	86	2.1	87	79	8	198	38	3	22	35	1.71
473390--473605	86	2.5	85	82	7	231	39	3	19	37	1.68
475064--475157	17	5.5	17	79	1	107	54	5	3	37	1.39
475069--475157	34	2.6	34	90	1	142	56	5	2	35	1.35
477609--477697	20	4.4	20	75	2	81	13	31	17	37	1.89
482001--482042	19	2.2	19	91	0	66	28	40	2	28	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
503725--503912	51	3.6	51	81	5	209	32	15	22	28	1.95
503876--504032	61	2.6	60	82	5	201	36	14	21	28	1.92
509154--509257	37	2.7	38	76	5	93	31	25	19	24	1.98
509360--509396	18	2.1	18	89	0	56	24	27	0	48	1.51
513963--514150	51	3.6	50	79	5	178	34	16	22	27	1.95
513985--514212	51	4.2	55	77	14	167	32	16	22	28	1.95
514104--514277	61	2.9	61	88	3	246	32	15	22	28	1.95
517046--517098	25	2.1	26	89	3	81	50	0	0	49	1.00
517059--517097	21	1.9	19	90	10	60	56	0	0	43	0.99
519228--519419	96	2.0	96	82	8	230	34	14	21	30	1.92
519681--519757	28	2.7	26	75	18	73	35	3	27	33	1.75
519714--519814	28	3.5	29	70	15	77	32	3	27	35	1.76
519714--519816	29	3.6	28	72	13	86	32	3	28	35	1.75
519822--519972	29	5.1	29	76	6	133	31	2	31	34	1.72
519822--519951	29	4.4	29	81	6	136	30	2	30	36	1.70
519822--519959	30	4.7	30	78	9	140	31	2	29	36	1.70
519822--519981	59	2.7	58	79	5	187	31	2	30	35	1.71
521681--521766	17	4.8	18	78	13	72	51	6	2	39	1.42
522131--522781	205	3.2	205	86	1	860	21	22	20	35	1.96
533757--533948	96	2.0	96	82	8	230	35	13	21	30	1.91
534206--534374	59	2.9	58	85	5	162	34	2	27	34	1.72
534239--534550	29	10.9	30	74	11	244	34	1	28	34	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
534345--534394	20	2.5	20	83	9	66	36	2	28	34	1.69
534326--534424	50	2.0	50	93	0	171	36	2	27	34	1.69
534372--534580	88	2.3	89	86	3	278	33	2	28	34	1.70
534372--534585	30	7.2	29	78	6	162	33	2	29	34	1.72
534372--534562	59	3.2	58	76	2	193	34	1	29	34	1.67
536223--536308	17	4.8	18	78	13	72	51	6	2	39	1.42
537326--537353	2	14.0	2	100	0	56	50	0	0	50	1.00
544844--545035	96	2.0	96	82	8	230	35	13	21	30	1.91
545293--545461	59	2.9	58	85	5	162	34	2	27	34	1.72
545326--545637	29	10.9	30	74	11	244	34	1	28	34	1.69

Tables:   1   2   3