genome.fa.s10573.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01010573.1 Kokia drynarioides strain JFW-HI SEQ_125496, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  690509

Tables:   1   2   3   

This is table  3  of  3  ( 333 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
545432--545481	20	2.5	20	83	9	66	36	2	28	34	1.69
545413--545511	50	2.0	50	93	0	171	36	2	27	34	1.69
545459--545667	88	2.3	89	86	3	278	33	2	28	34	1.70
545459--545672	30	7.2	29	78	6	162	33	2	29	34	1.72
545459--545649	59	3.2	58	76	2	193	34	1	29	34	1.67
547310--547395	17	4.8	18	78	13	72	51	6	2	39	1.42
548413--548440	2	14.0	2	100	0	56	50	0	0	50	1.00
548973--549011	21	1.9	19	90	10	60	56	0	0	43	0.99
550369--550417	24	2.0	24	88	7	73	8	0	20	71	1.11
553957--554021	27	2.4	27	79	2	78	30	32	20	16	1.95
554211--554264	27	2.0	27	82	7	65	33	0	3	62	1.12
554317--554354	17	2.4	17	91	8	62	28	0	7	63	1.23
568019--568071	14	3.9	14	87	7	65	33	15	3	47	1.63
568032--568070	14	2.8	14	96	0	69	33	12	5	48	1.63
568673--568744	17	4.2	17	80	0	90	38	2	4	54	1.34
568667--568733	34	2.0	34	93	0	116	32	2	7	56	1.42
570565--570984	59	7.2	60	75	12	303	35	25	3	36	1.73
570647--570809	28	5.6	30	72	23	93	36	24	1	37	1.66
570524--570984	29	15.8	29	74	14	308	34	25	3	36	1.74
576126--576198	18	4.2	17	76	16	69	79	2	16	1	0.92
576138--576198	13	4.6	13	76	15	63	80	1	16	1	0.88
576136--576200	21	3.1	21	77	4	69	78	1	18	1	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
577113--577411	99	3.0	99	89	0	438	32	15	32	20	1.93
577118--577417	49	6.1	50	79	5	333	32	14	32	20	1.93
577571--577666	41	2.3	41	84	7	115	32	17	14	35	1.90
577657--577768	39	2.9	38	76	12	111	21	33	21	24	1.98
577653--577802	78	1.9	78	81	10	182	21	31	22	24	1.98
577735--577878	39	3.7	38	73	7	94	24	33	20	22	1.97
577905--579537	209	7.8	210	88	0	2001	36	19	21	22	1.95
577905--579537	417	3.9	420	85	1	1994	36	19	21	22	1.95
579953--580024	17	4.2	17	80	0	90	38	2	4	54	1.34
579947--580013	34	2.0	34	93	0	116	32	2	7	56	1.42
581808--581867	30	2.0	30	90	0	93	36	20	3	40	1.69
581822--581879	30	1.9	30	89	6	91	32	27	1	37	1.67
581829--582229	30	13.7	29	71	14	238	33	24	5	36	1.78
581829--582228	29	13.7	29	70	13	205	33	24	5	36	1.78
581859--582228	59	6.4	57	73	12	204	33	24	5	36	1.79
581829--582226	205	2.0	204	87	1	575	33	24	5	36	1.78
596688--596864	52	3.4	52	92	1	284	26	14	22	36	1.93
602027--602080	26	2.1	26	89	0	81	25	25	1	46	1.63
603810--603866	22	2.7	22	71	15	57	42	7	3	47	1.47
604065--604125	24	2.6	23	76	5	68	47	6	4	40	1.51
609555--609621	33	2.0	33	100	0	134	32	11	5	49	1.64
610042--610257	109	2.0	109	84	3	283	42	13	11	32	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
610634--610673	21	2.0	21	85	5	55	70	2	5	22	1.19
615942--616074	70	1.9	67	87	4	194	32	12	13	42	1.81
617695--617785	44	2.0	46	83	8	116	29	5	29	35	1.80
620738--620767	3	10.0	3	100	0	60	33	0	0	66	0.92
633048--633102	23	2.3	25	78	12	71	58	0	3	38	1.16
633076--633142	30	2.2	30	78	14	75	52	0	4	43	1.21
633062--633112	22	2.3	23	82	3	59	54	0	1	43	1.11
633086--633145	32	1.9	30	90	6	93	48	0	5	46	1.24
633088--633161	32	2.5	29	77	14	71	47	1	4	47	1.29
636430--636468	18	2.2	18	86	9	53	38	0	0	61	0.96
636778--636804	14	1.9	14	100	0	54	22	0	29	48	1.51
638373--638437	26	2.4	27	69	19	64	52	4	1	41	1.31
639948--640089	30	4.7	30	77	3	115	33	21	7	38	1.81
648917--649079	48	3.6	48	73	18	179	38	17	21	22	1.93
648925--649172	85	2.9	85	84	4	322	39	16	21	22	1.92
649223--649435	48	4.7	47	75	12	169	37	15	23	23	1.93
649006--649388	208	1.8	208	88	3	592	38	16	21	23	1.93
649223--649379	85	1.8	85	87	0	233	37	15	23	23	1.93
649119--649617	257	1.9	255	86	2	705	38	17	20	24	1.93
651590--651805	30	7.3	30	78	9	153	33	24	5	37	1.77
651583--651799	89	2.4	89	77	11	214	35	23	4	36	1.76
651583--651814	60	3.9	58	75	10	195	34	23	4	37	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
653349--653416	23	3.0	23	80	0	82	44	14	11	29	1.81
654849--655020	82	2.1	81	95	2	308	18	15	12	54	1.72
655103--655162	23	2.5	22	82	12	66	20	1	31	46	1.60
655196--655242	14	3.2	15	82	14	62	14	0	25	59	1.36
655820--655915	20	4.9	20	66	16	58	51	2	0	46	1.12
655828--655907	29	2.7	29	92	5	126	53	1	0	45	1.08
655868--655909	22	2.0	21	86	9	59	57	0	0	42	0.99
656207--656284	20	4.0	20	76	14	74	37	1	5	56	1.30
658112--658210	26	3.8	26	89	0	153	28	19	22	30	1.98
658112--658236	52	2.4	52	85	2	153	30	20	20	28	1.98
658196--658261	26	2.6	25	83	7	87	36	22	15	25	1.93
658224--658323	27	3.7	27	75	6	80	40	18	16	26	1.90
662795--663091	41	7.2	41	82	5	296	26	24	11	37	1.90
662808--663091	82	3.5	81	80	3	327	26	23	12	36	1.91
662795--663085	123	2.4	123	84	2	352	26	24	12	36	1.90
665408--665481	30	2.4	30	95	2	130	47	1	0	51	1.09
665442--665484	21	2.0	23	90	9	72	53	0	0	46	1.00
666308--666344	14	2.8	13	88	8	56	59	0	2	37	1.12
668420--668445	4	6.5	4	100	0	52	50	23	0	26	1.50
670966--671010	19	2.4	19	82	14	58	31	6	4	57	1.44
671290--671327	14	2.7	14	87	0	58	47	2	10	39	1.52
672058--672104	25	1.9	24	82	4	58	70	10	8	10	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
679050--679084	5	6.8	5	90	6	52	80	0	14	5	0.89
679509--679551	23	1.9	22	90	4	68	6	37	0	55	1.27
687197--687226	14	2.1	14	93	0	51	70	3	6	20	1.25
687217--687249	11	3.0	11	90	0	57	63	3	0	33	1.10
688805--688857	12	4.6	12	77	13	58	79	0	3	16	0.88

Tables:   1   2   3

The End!