genome.fa.s10916.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01010916.1 Kokia drynarioides strain JFW-HI SEQ_125884, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  503119

Tables:   1   2   

This is table  2  of  2  ( 237 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
213199--213688	193	2.6	187	82	8	598	16	25	19	38	1.92
221512--221570	30	1.9	31	82	3	75	42	1	25	30	1.65
221507--221996	58	8.4	59	70	16	146	38	4	24	32	1.76
221600--221876	29	9.6	27	67	14	99	36	5	24	32	1.79
221538--221903	58	6.3	58	78	8	325	37	5	24	32	1.78
221752--221903	29	5.2	30	70	16	122	40	5	21	33	1.75
223050--223093	22	2.0	23	90	4	72	34	2	2	61	1.21
223127--223165	18	2.2	18	95	0	69	46	0	0	53	1.00
223116--223157	15	2.8	15	88	0	66	42	2	0	54	1.13
223116--223165	15	3.1	15	78	15	55	44	2	0	54	1.11
223915--224006	17	5.4	17	81	3	114	54	4	0	41	1.20
223915--223978	6	11.2	6	76	15	64	53	3	0	43	1.16
229774--229801	2	14.0	2	100	0	56	50	0	0	50	1.00
232171--232229	31	1.9	31	85	0	82	42	8	6	42	1.61
233070--233114	19	2.4	19	85	3	56	73	0	0	26	0.84
238510--238729	109	2.0	109	99	0	431	33	19	5	41	1.74
244543--244589	17	2.9	16	87	6	67	57	12	12	17	1.65
254409--254446	17	2.3	17	81	4	51	34	13	5	47	1.65
254794--254852	31	1.9	30	83	10	75	45	5	0	49	1.24
255602--255734	56	2.3	61	81	6	159	40	15	9	34	1.79
255859--255930	19	3.8	19	80	14	85	58	8	1	31	1.36
255883--255973	20	4.6	20	76	13	64	60	5	2	31	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
255859--255953	10	9.9	9	70	13	64	60	6	2	31	1.34
256591--256715	9	13.0	9	75	14	58	28	1	5	64	1.26
256645--256680	13	2.8	13	100	0	72	30	0	5	63	1.17
256661--256715	18	2.9	19	84	10	69	23	0	7	69	1.14
257131--257219	44	2.0	45	88	4	135	37	19	11	32	1.87
257197--257263	34	1.9	35	93	3	118	37	8	19	34	1.83
257235--257403	60	2.8	60	85	5	234	33	17	17	31	1.94
257232--257419	59	3.2	58	79	11	204	35	16	17	31	1.92
261351--261383	17	1.9	17	100	0	66	42	3	6	48	1.43
261354--261399	17	2.8	17	86	3	58	43	4	8	43	1.55
261523--261735	83	2.5	84	86	2	293	42	6	4	47	1.47
264039--264121	30	2.7	31	79	5	98	27	8	2	61	1.38
264926--265435	62	8.4	60	75	9	342	38	16	18	27	1.92
264926--265434	120	4.2	118	76	11	415	38	16	18	27	1.92
272250--272526	137	2.0	137	97	0	527	36	16	17	28	1.92
273419--273447	3	10.0	3	92	7	51	68	0	31	0	0.89
282120--282156	12	2.9	12	92	8	56	21	0	0	78	0.75
283820--283893	37	2.0	37	100	0	148	40	8	10	40	1.70
285649--285800	77	2.0	76	84	7	202	31	18	9	40	1.83
294608--294651	19	2.3	19	92	0	70	36	11	11	40	1.77
294617--294653	19	1.9	19	100	0	74	32	10	16	40	1.83
300038--300076	20	2.0	20	90	10	62	64	5	0	30	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
304008--304048	19	2.2	19	95	0	73	36	4	2	56	1.34
306981--307016	18	2.1	16	90	10	54	52	0	16	30	1.44
307553--307791	52	4.6	52	90	0	370	26	14	24	34	1.94
309686--309710	13	1.9	13	100	0	50	0	8	0	92	0.40
317773--317840	29	2.3	29	80	9	75	39	1	0	58	1.07
317809--317854	20	2.3	20	78	14	51	41	0	2	56	1.11
320207--320311	35	3.1	34	77	8	92	51	11	19	18	1.75
324229--324318	27	3.3	27	95	0	162	36	26	15	21	1.93
328902--328935	18	1.9	18	88	5	52	38	0	2	58	1.13
337838--338050	30	7.1	30	72	15	129	37	5	23	33	1.78
337860--338028	89	1.9	91	86	4	245	38	5	22	33	1.78
344683--344736	21	2.6	21	80	11	74	29	11	27	31	1.91
349545--349603	21	2.8	22	84	7	77	23	18	25	32	1.97
354489--354605	59	2.0	59	93	0	198	39	7	21	31	1.82
355108--355149	21	2.0	22	85	4	59	61	2	7	28	1.35
357172--357216	18	2.6	17	83	10	56	35	13	15	35	1.87
363731--363765	17	2.2	15	90	10	52	40	0	17	42	1.49
379973--380032	31	1.9	31	93	0	102	40	20	16	23	1.91
383133--383171	18	2.1	19	86	13	55	61	0	2	35	1.10
384152--384184	11	3.0	11	100	0	66	0	9	0	90	0.44
384152--384197	22	2.1	22	83	0	56	0	15	2	82	0.76
384659--384697	20	2.1	18	85	9	51	35	5	5	53	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
387533--387628	48	2.0	48	97	0	183	44	16	19	18	1.87
387650--387699	15	3.3	15	78	10	66	22	32	18	28	1.97
387748--387905	81	2.0	80	88	1	235	38	4	15	41	1.68
389730--389858	57	2.3	57	90	0	195	27	27	17	28	1.97
390173--390594	214	2.0	214	96	0	772	37	13	14	34	1.86
391070--391348	131	2.1	130	90	3	436	37	19	12	30	1.89
393507--394294	292	2.7	292	98	0	1522	39	16	17	27	1.90
395049--395136	30	2.9	30	89	0	131	30	12	36	20	1.90
398716--398806	18	5.1	18	77	5	85	30	25	23	20	1.98
398720--398806	36	2.4	36	84	7	115	31	25	24	19	1.98
398809--399392	290	2.0	291	94	1	1037	39	16	16	28	1.90
399430--399528	43	2.3	43	93	3	166	49	21	10	19	1.77
399860--399930	33	2.2	33	81	0	79	8	28	12	50	1.69
399873--399940	33	2.1	33	94	0	118	7	29	13	50	1.68
403546--403621	28	2.6	28	95	4	134	18	10	17	53	1.71
406021--406146	27	4.7	25	75	15	101	22	12	10	54	1.67
411399--411564	31	5.6	30	68	21	125	24	18	11	45	1.83
411427--411533	28	3.7	28	70	11	90	26	18	10	44	1.81
411399--411647	59	4.2	59	86	3	313	22	17	12	46	1.82
411849--411925	30	2.6	30	81	2	84	42	10	19	27	1.83
418431--418548	55	2.1	55	90	0	182	46	16	10	27	1.78
418570--418844	55	5.1	54	78	7	263	50	15	6	27	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
418560--418839	107	2.6	108	81	4	314	51	15	7	25	1.69
419843--419912	26	2.6	26	80	8	70	30	15	17	37	1.91
421190--421435	52	4.8	51	83	3	269	31	17	22	29	1.96
424829--424856	12	2.3	12	100	0	56	85	0	7	7	0.73
432446--432478	3	11.0	3	100	0	66	66	0	0	33	0.92
436174--436203	16	1.9	16	93	6	53	76	0	0	23	0.78
436221--436245	2	12.5	2	100	0	50	52	0	0	48	1.00
439878--439951	31	2.5	28	77	14	76	44	10	6	37	1.66
442462--442629	30	5.7	29	75	10	135	33	22	7	35	1.83
442472--442625	59	2.6	58	80	9	159	33	22	7	35	1.83
443655--443687	17	1.9	17	93	0	57	24	3	27	45	1.68
443903--443945	22	2.0	22	86	9	61	20	2	2	74	1.04
445147--445320	59	3.0	60	84	8	207	40	24	2	33	1.68
445149--445320	29	5.8	30	82	7	192	40	24	2	33	1.68
453525--454131	302	2.0	302	93	1	1038	28	12	19	40	1.88
465562--465774	40	5.3	40	72	9	164	36	19	16	26	1.94
465536--465833	121	2.5	121	84	3	352	33	23	16	26	1.95
465561--465782	81	2.8	80	75	7	223	36	20	16	26	1.94
466673--466713	21	2.0	20	90	4	64	21	2	2	73	1.07
467864--468003	60	2.3	58	79	11	142	37	22	5	35	1.76
467858--468013	30	5.2	31	75	9	119	36	21	6	35	1.79
469079--469144	31	2.1	32	82	2	80	51	3	3	42	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
469131--469203	22	3.3	22	68	21	62	45	2	0	52	1.15
470681--470747	30	2.2	30	86	5	89	44	4	1	49	1.31
478613--478641	14	2.1	14	100	0	58	20	20	6	51	1.70
479903--479952	23	2.2	23	82	7	57	58	18	20	4	1.55
480414--480454	15	2.5	17	80	11	59	63	0	2	34	1.08
489086--489118	6	5.8	6	86	13	52	0	0	15	84	0.61
489086--489117	11	2.9	11	100	0	64	0	0	15	84	0.63

Tables:   1   2

The End!