genome.fa.s11063.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011063.1 Kokia drynarioides strain JFW-HI SEQ_126034, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  552818

Tables:   1   2   3   

This is table  2  of  3  ( 280 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
219901--219932	16	2.0	16	93	0	55	59	0	40	0	0.97
221024--221073	16	3.1	16	78	18	59	58	4	2	36	1.29
222088--222555	29	15.9	30	75	11	346	34	5	27	32	1.79
222084--222556	59	8.1	59	81	5	437	34	5	28	32	1.79
223175--223251	3	25.3	3	88	2	100	40	1	0	58	1.06
223940--224004	6	11.3	6	71	21	50	52	1	1	44	1.19
223943--224004	17	3.7	16	85	8	79	53	1	1	43	1.20
224369--224440	38	1.9	38	82	2	92	18	22	20	38	1.93
224425--224982	200	2.8	204	88	3	876	21	21	21	35	1.96
225736--225825	47	1.9	47	86	4	128	11	26	16	45	1.81
236068--236259	96	2.0	96	83	8	239	36	13	18	31	1.89
236480--236537	27	2.1	27	84	9	73	25	6	29	37	1.82
236497--236747	58	4.3	57	72	13	145	33	5	27	33	1.80
236554--237074	117	4.4	115	80	8	509	35	5	26	32	1.79
236550--237074	59	8.9	59	81	5	496	35	5	26	32	1.79
238096--238205	3	36.0	3	85	7	123	39	1	0	58	1.15
238142--238251	15	7.7	14	73	12	75	35	5	2	56	1.37
240239--240300	22	2.5	24	82	15	65	59	6	4	29	1.43
242484--242509	3	8.7	3	100	0	52	34	0	0	65	0.93
242402--242613	104	2.0	105	94	2	374	36	15	14	34	1.87
242590--242632	3	14.3	3	100	0	86	32	0	0	67	0.91
243745--243808	31	2.1	31	90	0	101	35	23	18	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
248873--248958	37	2.4	36	84	7	120	23	19	13	43	1.87
250360--250404	3	15.0	3	85	0	63	35	0	4	60	1.17
250494--250546	24	2.2	24	96	0	97	37	22	7	32	1.82
251042--251079	18	2.2	18	90	4	60	44	0	0	55	0.99
252231--252281	22	2.3	23	82	3	59	50	0	3	45	1.20
252257--252314	31	1.9	31	89	6	93	50	1	5	43	1.35
256710--256802	33	2.8	33	82	6	100	34	24	15	25	1.94
256796--256907	30	3.7	30	76	7	118	24	23	25	27	2.00
263504--263595	46	2.0	47	97	2	177	33	23	10	31	1.90
271860--271906	18	2.6	18	93	0	85	29	34	17	19	1.94
274580--274635	23	2.4	23	87	0	85	33	16	19	30	1.94
277547--277600	3	18.7	3	75	21	53	68	0	31	0	0.90
278118--278150	12	2.8	12	90	9	50	27	0	45	27	1.54
284091--284131	19	2.1	20	90	4	66	36	29	4	29	1.78
287529--287570	21	2.0	21	85	4	57	16	26	30	26	1.97
289012--289065	25	2.2	25	96	0	99	55	14	1	27	1.50
289012--289055	14	3.4	14	78	18	58	52	15	2	29	1.55
289026--289065	11	3.4	11	81	18	53	60	12	0	27	1.33
290619--290670	20	2.8	19	85	8	63	5	17	0	76	0.97
291694--291739	15	3.1	14	85	14	58	2	26	0	71	0.97
293511--293566	24	2.3	25	81	9	71	67	7	7	17	1.37
293511--293564	13	4.3	12	77	15	56	70	7	7	14	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
297885--297928	18	2.4	18	96	0	79	27	13	15	43	1.85
303541--303571	7	4.4	7	95	0	53	45	0	54	0	0.99
303987--304185	30	6.8	30	77	8	142	34	25	2	38	1.67
303992--304185	57	3.3	58	78	8	198	35	24	2	38	1.67
303992--304209	29	7.5	29	78	11	187	36	22	1	39	1.65
303992--304209	59	3.8	58	77	10	196	36	22	1	39	1.65
304631--304729	30	3.3	30	87	5	155	36	19	2	42	1.63
304717--304819	28	3.6	28	80	5	118	39	29	1	29	1.68
304693--304826	57	2.4	55	82	7	144	36	29	2	31	1.72
305392--305484	46	2.0	46	100	0	186	35	15	12	36	1.85
314469--314498	3	10.0	3	100	0	60	66	0	33	0	0.92
316702--317103	39	10.3	39	74	12	299	23	32	19	24	1.98
316702--317103	78	5.2	78	82	5	424	23	32	19	24	1.98
316702--317127	156	2.7	156	80	7	474	23	32	20	23	1.98
317138--317241	3	34.7	3	94	0	118	61	0	0	28	0.95
318370--318410	4	10.5	4	80	15	50	70	0	0	29	0.87
318370--318410	16	2.7	15	82	17	57	70	0	0	29	0.87
318374--318409	11	3.2	11	88	4	54	69	0	0	30	0.89
319376--319804	30	14.4	29	76	11	304	35	24	2	37	1.69
319406--319779	90	4.2	89	80	8	352	36	24	2	36	1.68
319464--319804	60	5.7	60	80	8	349	36	24	2	37	1.68
322365--322428	30	2.1	31	85	5	87	20	1	9	68	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
322935--322984	25	2.0	25	100	0	100	48	4	4	44	1.40
325329--325394	24	2.9	22	74	12	71	45	0	1	53	1.09
325385--325457	30	2.3	30	81	11	76	43	0	4	52	1.20
326790--327066	59	4.7	57	80	10	276	31	4	29	34	1.77
326805--327070	88	3.0	88	82	8	310	31	4	30	32	1.78
326790--327066	29	9.4	30	79	11	288	31	4	29	34	1.77
328200--328229	15	2.0	15	93	0	51	56	0	0	43	0.99
328292--328331	21	1.9	21	84	0	53	50	7	0	42	1.30
328976--329029	17	3.1	18	82	12	69	50	5	0	44	1.25
328967--329028	17	3.8	16	83	8	63	48	4	0	46	1.23
329467--329621	37	3.9	37	70	18	103	22	23	18	35	1.96
341372--341465	29	3.2	29	70	15	77	39	6	27	26	1.80
341382--341754	30	12.4	30	77	12	311	33	3	27	35	1.73
341382--341660	59	4.7	59	82	2	294	32	3	27	35	1.74
341334--341653	117	2.7	115	82	5	322	33	3	28	34	1.75
341611--341697	38	2.3	38	87	0	120	32	1	26	40	1.64
341581--341721	68	2.1	68	87	2	203	31	1	28	39	1.66
341552--341747	97	2.0	97	87	3	279	32	2	27	38	1.70
342892--342954	31	2.0	31	84	6	83	42	4	6	46	1.50
343648--343701	17	3.1	17	84	7	65	48	5	0	46	1.25
349523--349594	27	2.7	27	81	12	69	38	5	1	54	1.33
350442--350492	24	2.1	24	88	0	75	56	9	9	23	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
352416--352490	24	3.1	24	82	0	96	57	6	9	26	1.55
354233--354270	17	2.1	19	85	9	53	26	5	13	55	1.59
357132--357174	13	3.3	13	76	0	50	34	0	4	60	1.17
362752--362790	20	2.0	20	84	0	51	76	5	7	10	1.13
369365--369391	13	2.1	13	100	0	54	51	0	0	48	1.00
369391--369451	10	6.0	10	76	16	63	4	19	0	75	0.98
370519--370554	15	2.4	15	90	0	54	8	36	8	47	1.64
396792--396924	28	4.8	28	83	3	162	31	21	15	32	1.94
399996--400036	22	1.9	21	85	5	55	60	0	4	34	1.18
400202--400235	13	2.5	14	85	4	52	29	17	11	41	1.85
400559--400584	12	2.2	12	100	0	52	69	0	15	15	1.20
401588--402107	260	2.0	260	92	0	871	29	21	23	25	1.99
404800--404837	12	3.3	12	78	14	53	65	0	28	5	1.14
405269--405316	17	2.8	17	83	0	60	20	16	12	50	1.78
411772--411865	27	3.5	27	82	2	100	23	22	10	43	1.84
421123--421610	245	2.0	245	97	0	922	35	17	13	33	1.89
423195--423227	10	3.4	10	87	4	50	15	0	12	72	1.12
424309--424345	16	2.3	16	100	0	74	56	21	0	21	1.42
424411--424461	26	2.0	26	100	0	102	47	7	7	37	1.62
424908--424965	25	2.3	25	100	0	116	60	10	6	22	1.53
427972--428169	9	20.6	9	65	17	51	59	8	0	31	1.30
428161--428208	25	1.9	25	83	8	62	54	4	2	39	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
429287--429355	10	7.0	10	85	8	97	28	0	4	66	1.10
429288--429388	10	10.4	9	75	18	80	31	0	3	63	1.19
429288--429380	30	3.2	29	83	8	91	31	1	4	63	1.21
433829--433881	15	3.5	15	80	10	54	9	0	20	69	1.15
433834--433897	30	2.1	30	82	5	76	9	1	23	65	1.30
433831--433881	25	2.0	25	84	0	66	7	0	21	70	1.12
433855--433897	15	2.9	15	80	10	52	9	2	25	62	1.37
438385--438414	15	1.9	16	93	6	53	56	3	0	40	1.16
438448--438521	30	2.5	28	74	18	71	48	1	4	45	1.29
438448--438511	14	4.5	14	74	11	51	48	1	3	46	1.27

Tables:   1   2   3