genome.fa.s11063.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011063.1 Kokia drynarioides strain JFW-HI SEQ_126034, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  552818

Tables:   1   2   3   

This is table  3  of  3  ( 280 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
438451--438510	30	1.9	30	86	10	84	48	1	3	46	1.28
438455--438554	23	4.4	23	72	18	75	51	1	4	44	1.27
441179--441210	3	10.7	3	93	0	55	62	0	0	37	0.95
445219--445520	158	1.9	158	85	1	417	30	25	23	21	1.99
453200--453240	20	2.0	20	85	4	55	63	0	2	34	1.08
454945--455412	98	4.8	98	88	4	642	35	16	15	32	1.91
455405--455469	29	2.3	29	89	2	96	40	18	16	24	1.91
465416--465508	9	9.9	9	69	17	55	37	0	4	58	1.18
465419--465496	10	8.2	9	72	17	52	37	0	3	58	1.16
465428--465488	20	3.1	20	80	19	67	34	0	4	60	1.18
466186--466240	25	2.2	25	80	6	58	27	0	3	69	1.05
480290--480352	27	2.3	27	97	0	117	20	30	15	33	1.94
494099--494209	38	2.9	38	80	6	111	41	14	21	22	1.89
494143--494226	38	2.2	38	82	4	98	44	13	19	23	1.85
494162--494371	41	5.3	41	76	8	175	43	13	17	24	1.86
494162--494347	79	2.4	79	81	3	230	45	13	16	24	1.84
494200--494421	120	1.9	120	85	1	311	44	13	18	24	1.85
495393--495450	21	2.8	21	86	5	73	29	20	17	32	1.95
506838--506895	28	2.0	31	86	10	86	39	6	3	50	1.46
507789--507840	24	2.2	24	85	0	68	55	7	3	32	1.46
509758--509811	24	2.2	24	90	0	81	57	3	1	37	1.27
510643--510699	28	2.0	28	96	0	105	40	10	19	29	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
513580--513627	16	3.1	17	80	14	50	50	0	4	45	1.21
513599--513627	14	2.0	15	93	6	51	55	0	6	37	1.27
514883--514917	18	2.0	17	94	5	61	22	17	2	57	1.53
517531--517623	46	2.0	46	89	0	141	21	5	10	62	1.47
528713--528758	23	2.0	23	100	0	92	52	0	4	43	1.21
533404--533455	24	2.1	25	82	10	63	9	21	0	69	1.17
533404--533454	25	2.0	25	82	14	61	9	19	0	70	1.14
538670--538873	30	6.9	30	80	7	193	37	24	1	36	1.67
538670--538873	59	3.5	58	82	6	250	37	24	1	36	1.67
538672--538869	89	2.2	89	85	5	258	37	25	2	35	1.68
542730--542777	24	2.0	23	88	11	71	50	8	22	18	1.74
550791--550950	85	1.9	85	85	0	221	41	14	21	22	1.89
550767--552058	209	6.2	210	85	3	1569	38	16	20	24	1.92
551618--551776	48	3.6	47	74	18	167	35	13	24	26	1.93
551666--551737	37	1.9	37	97	0	135	36	13	22	27	1.92
551617--551776	85	1.9	85	90	0	257	35	14	24	26	1.94
552617--552667	20	2.8	17	73	23	50	49	1	0	49	1.12
552615--552681	17	3.6	18	75	20	66	46	2	0	50	1.16

Tables:   1   2   3

The End!