genome.fa.s11124.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011124.1 Kokia drynarioides strain JFW-HI SEQ_126097, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  574181

Tables:   1   2   3   

This is table  2  of  3  ( 270 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
280286--280336	4	12.8	4	100	0	102	50	23	0	25	1.49
289385--289429	21	2.1	21	87	0	63	33	31	13	22	1.92
291301--291350	22	2.3	22	82	0	64	36	0	0	64	0.94
291685--291752	30	2.3	30	82	12	86	61	1	2	33	1.20
296858--296901	17	2.4	17	81	11	52	47	11	6	34	1.66
302661--302694	15	2.3	15	89	0	50	32	5	8	52	1.56
303385--303439	21	2.8	18	78	13	56	70	0	0	29	0.87
304564--304588	2	12.5	2	100	0	50	48	0	0	52	1.00
313202--313602	29	13.7	29	77	11	354	32	3	30	33	1.75
313179--313602	59	7.2	59	84	4	518	32	3	30	33	1.76
313141--313602	88	5.2	87	77	14	398	33	3	29	33	1.75
314554--314644	33	2.8	32	78	18	98	36	8	3	51	1.49
314552--314616	19	3.6	18	77	6	60	33	9	4	52	1.54
315280--315388	17	6.3	17	82	7	130	52	2	1	43	1.26
315291--315388	35	2.8	35	87	6	128	54	3	2	40	1.28
315280--315357	6	13.5	6	67	22	51	51	1	2	44	1.23
315280--315388	52	2.1	52	87	0	155	52	2	1	43	1.26
316166--316251	31	2.8	31	94	0	145	39	8	12	39	1.73
319232--319291	24	2.5	25	81	5	61	3	11	5	80	1.00
319477--319501	13	1.9	13	100	0	50	48	0	0	52	1.00
320456--320518	31	2.0	31	87	0	90	42	4	9	42	1.58
323718--323756	2	19.5	2	94	0	69	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
325161--325227	29	2.3	29	84	2	80	17	20	19	41	1.90
326133--326166	15	2.3	15	89	0	50	41	0	0	58	0.98
331718--331761	23	1.9	23	95	0	79	15	22	20	40	1.90
334451--334517	6	11.7	6	78	15	79	43	1	1	53	1.19
334450--334531	17	4.8	17	77	4	76	43	2	1	52	1.22
334451--334517	23	2.9	23	82	4	82	43	1	1	53	1.19
335208--335313	3	34.0	3	79	11	88	59	2	4	33	1.33
335269--335313	7	6.7	7	85	12	51	64	2	0	33	1.06
336268--336516	29	8.5	28	80	9	264	34	27	4	34	1.76
336268--336549	29	9.6	28	76	9	233	33	28	5	32	1.80
336268--336516	59	4.2	58	84	3	320	34	27	4	34	1.76
349287--349359	6	12.7	6	75	13	73	41	1	2	54	1.23
349287--349359	17	4.2	17	79	8	76	41	1	2	54	1.23
349298--349373	23	3.3	23	83	1	98	43	2	2	51	1.29
350060--350143	3	28.0	3	84	4	98	58	1	5	34	1.30
351092--351196	30	3.5	30	79	5	88	33	22	5	38	1.78
351114--351196	30	2.7	30	88	1	121	32	22	7	37	1.82
351574--351765	96	2.0	96	82	6	237	29	18	15	36	1.91
354221--354274	27	2.0	27	82	3	65	24	9	35	31	1.87
355657--355699	22	2.0	22	85	0	59	72	2	23	2	1.08
360608--360641	16	2.1	17	89	10	54	76	8	0	14	1.01
362961--362998	20	1.9	20	84	10	51	47	10	23	18	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
367679--367729	18	2.8	18	87	0	75	29	23	25	21	1.99
373563--373641	19	4.2	19	80	7	90	34	15	22	27	1.94
373597--373653	19	3.0	19	86	0	60	38	14	22	24	1.91
374349--374406	21	2.8	21	91	0	89	25	15	25	32	1.95
380721--380757	19	1.9	19	94	0	65	29	21	16	32	1.95
383069--383232	80	2.1	79	90	2	258	28	14	20	35	1.92
383649--383792	48	3.0	47	83	4	180	50	14	10	25	1.74
401778--402088	48	6.6	47	71	15	212	34	18	28	18	1.94
401780--402088	97	3.3	94	84	7	380	34	18	28	18	1.94
401783--402006	49	4.6	47	75	11	186	33	18	28	19	1.96
401912--402088	90	2.0	90	87	2	257	36	18	28	17	1.93
402678--402811	23	5.8	23	85	1	171	41	25	19	14	1.89
402675--402823	23	6.5	22	83	5	163	42	24	19	14	1.88
402675--402823	69	2.2	68	84	3	190	42	24	19	14	1.88
404543--404680	49	2.8	49	79	6	154	34	13	28	24	1.93
405025--405058	16	2.1	17	89	10	54	76	8	0	14	1.01
405293--405322	11	2.7	11	100	0	60	16	46	26	10	1.78
406785--406830	24	2.0	23	83	8	58	43	4	0	52	1.21
406893--407107	110	2.0	108	83	5	272	33	10	15	40	1.81
410842--410957	57	2.0	57	98	0	223	45	9	13	31	1.76
412036--412091	27	2.2	27	84	9	73	53	5	1	39	1.34
419829--419871	5	8.6	5	94	0	77	41	55	0	2	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
420044--420094	21	2.4	21	87	12	70	35	0	1	62	1.06
422049--422185	40	3.3	42	78	5	143	31	26	18	24	1.97
424351--424415	33	2.0	33	100	0	130	32	30	6	30	1.82
429805--429924	58	2.1	58	87	3	170	31	0	19	48	1.55
429819--429939	58	2.1	58	83	6	147	32	0	19	47	1.55
431750--431921	59	2.9	59	87	5	215	33	5	28	32	1.79
431781--432394	30	20.8	29	74	16	412	29	2	32	35	1.73
431781--432394	59	10.4	59	86	5	682	29	2	32	35	1.73
434152--434229	17	4.5	17	80	1	84	50	5	1	43	1.32
434276--434314	19	2.1	19	100	0	78	25	10	5	58	1.51
442922--442993	17	4.2	17	76	15	67	37	2	2	56	1.28
443797--443907	12	8.9	12	71	13	73	54	1	6	36	1.36
443799--443841	9	4.8	9	79	0	50	51	0	6	41	1.29
443873--443902	15	1.9	16	93	6	53	56	0	0	43	0.99
444916--445254	60	5.8	58	78	9	280	31	22	2	43	1.68
444916--445193	30	9.6	28	71	12	159	32	21	2	43	1.65
444917--445193	59	4.7	59	82	8	266	32	21	2	44	1.65
444914--445193	117	2.4	118	80	5	329	31	22	2	43	1.65
444918--445243	176	1.9	174	83	8	430	31	22	3	42	1.68
452049--452099	18	2.9	18	83	11	61	64	3	25	5	1.33
456626--456952	48	6.7	49	79	5	277	38	22	25	13	1.90
456626--457056	49	8.8	49	75	8	279	39	21	25	14	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
456722--457061	149	2.3	147	86	3	459	38	20	26	15	1.91
456626--457034	99	4.2	97	78	7	326	39	20	25	14	1.91
456871--457083	99	2.2	97	82	5	241	40	17	25	16	1.90
457591--457671	17	4.5	19	76	13	82	34	3	2	59	1.29
457607--457680	6	12.8	6	69	18	50	39	2	2	55	1.28
457607--457680	17	4.3	17	83	8	87	39	2	2	55	1.28
457591--457671	36	2.3	36	86	2	110	34	3	2	59	1.29
457794--457826	11	3.0	11	95	0	57	51	39	0	9	1.34
458472--458581	12	9.1	12	73	14	68	55	1	5	37	1.34
458548--458577	15	1.9	16	93	6	53	56	0	0	43	0.99
458510--458583	13	7.0	10	73	14	53	60	1	4	33	1.24
459612--459842	30	7.8	30	74	12	210	31	25	3	40	1.71
459611--460052	59	7.4	60	78	9	369	30	25	3	39	1.74
459607--459957	117	2.9	116	81	11	356	31	25	3	40	1.72
459737--459957	29	7.5	28	68	16	108	31	26	3	38	1.72
459617--460024	117	3.4	122	78	10	325	31	25	3	39	1.74
460949--461025	29	2.7	28	82	13	86	35	31	6	27	1.82
470943--470975	3	11.0	3	100	0	66	66	0	33	0	0.92
473142--473317	48	3.6	48	76	3	172	35	15	31	17	1.91
473498--473641	72	2.0	72	94	2	254	31	16	15	35	1.91
473636--474035	78	5.1	78	81	3	421	25	28	20	26	1.99
473653--473935	39	7.3	38	65	12	110	24	26	21	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
476337--476687	30	11.9	30	77	8	290	37	23	2	36	1.70
476338--476700	89	4.1	86	77	9	338	37	23	2	36	1.70
476338--476700	119	3.1	115	79	10	367	37	23	2	36	1.70
476606--476716	58	1.9	59	81	9	138	37	29	4	27	1.77
478116--478161	24	1.9	24	86	0	65	36	2	6	54	1.39
478806--478836	3	10.3	3	100	0	62	35	0	0	64	0.94
485776--485802	9	3.0	9	100	0	54	55	33	0	11	1.35
490787--490828	21	2.1	19	83	16	50	14	16	7	61	1.53
500113--500186	36	2.1	36	97	0	139	32	4	24	39	1.74
502067--502097	16	1.9	16	93	0	53	22	16	0	61	1.34

Tables:   1   2   3