genome.fa.s11124.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011124.1 Kokia drynarioides strain JFW-HI SEQ_126097, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  574181

Tables:   1   2   3   

This is table  3  of  3  ( 270 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
505782--506215	52	8.3	52	86	3	552	30	14	23	31	1.94
512326--512367	20	2.1	20	91	8	68	42	0	23	33	1.55
513228--513637	52	7.9	52	85	1	545	29	13	24	32	1.93
513223--513635	207	2.0	210	89	1	634	29	13	24	32	1.93
521471--521504	15	2.3	15	90	5	52	58	14	14	11	1.63
529566--529590	2	12.5	2	100	0	50	48	0	0	52	1.00
530697--530831	23	5.8	23	72	4	101	25	17	15	40	1.89
530714--530815	24	4.3	23	73	3	87	27	17	13	41	1.87
530712--530835	47	2.7	46	79	8	119	27	16	14	41	1.88
533761--533975	59	3.6	59	76	7	197	35	5	26	33	1.80
533877--533970	30	3.2	29	70	18	77	35	2	27	35	1.69
533854--533956	29	3.5	29	70	11	75	36	4	23	34	1.76
533876--534082	29	7.0	30	71	14	105	36	3	24	35	1.72
535205--535238	3	11.7	3	93	6	61	64	0	0	35	0.94
535956--536022	6	11.8	6	72	12	52	53	0	1	44	1.09
535956--536040	17	5.4	17	74	16	76	52	1	1	44	1.16
535956--536040	45	1.9	44	90	2	134	52	1	1	44	1.16
536340--537005	209	3.2	204	85	4	806	24	22	16	36	1.94
546069--546115	24	2.0	24	100	0	94	27	12	8	51	1.69
548983--549047	29	2.2	30	88	2	96	30	7	26	35	1.84
549062--549174	58	1.9	58	83	1	145	37	7	21	33	1.82
549249--549503	30	8.6	30	76	14	147	36	2	24	36	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
549210--549499	59	4.9	57	75	15	184	37	3	23	36	1.71
549264--549488	89	2.5	88	76	10	233	37	3	23	36	1.71
551328--551364	17	2.2	16	90	4	56	51	2	0	45	1.15
551299--551366	29	2.4	29	82	2	84	51	1	2	44	1.25
557294--557389	48	2.0	49	91	2	158	31	16	18	33	1.94
566539--566588	25	2.0	25	96	0	91	50	20	0	30	1.49
568303--568347	3	15.0	3	90	0	54	31	8	0	60	1.28
568789--569292	146	3.4	146	83	5	611	44	4	7	43	1.52

Tables:   1   2   3

The End!