genome.fa.s13010.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013010.1 Kokia drynarioides strain JFW-HI SEQ_128028, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  507880

Tables:   1   2   3   

This is table  1  of  3  ( 264 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2127--2168	19	2.3	18	84	12	50	52	4	11	30	1.59
4816--4855	12	3.5	11	83	12	53	32	20	2	45	1.64
4955--5021	12	5.6	12	69	13	57	31	11	13	43	1.80
4944--5060	24	4.9	24	90	1	155	30	12	14	41	1.83
6097--6239	71	2.0	71	100	0	286	46	15	18	19	1.84
11943--11986	18	2.5	18	82	10	56	34	0	4	61	1.16
15162--15200	19	2.1	19	85	9	53	51	5	0	43	1.24
17216--17273	31	1.9	31	89	3	91	44	3	0	51	1.18
17222--17285	31	2.1	31	82	5	76	50	3	0	46	1.17
18117--18167	21	2.4	21	83	0	66	54	11	3	29	1.54
19825--19867	22	2.0	22	82	17	54	58	2	13	25	1.48
19877--19922	21	2.2	21	88	7	67	82	10	2	4	0.89
20393--20440	23	2.1	23	84	7	62	39	16	10	33	1.83
20407--20492	35	2.5	35	98	0	163	44	15	11	29	1.81
28491--28607	59	1.9	62	83	8	152	49	4	4	41	1.42
28586--28634	20	2.7	18	77	22	57	51	4	2	42	1.32
31562--31660	52	1.9	52	95	0	180	26	14	24	35	1.93
31638--31679	19	2.3	19	95	4	77	30	14	16	38	1.89
31586--31730	71	2.1	70	90	2	229	28	13	20	37	1.91
31661--31762	51	2.0	51	92	0	168	26	12	22	38	1.90
44721--44907	52	3.6	52	88	2	268	27	14	23	33	1.94
51512--51663	52	2.9	51	84	1	178	28	13	23	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51540--51699	52	3.1	51	79	8	155	29	13	23	34	1.92
57310--57500	52	3.7	52	89	0	265	27	12	22	37	1.90
57324--57549	104	2.2	104	83	3	285	26	12	22	38	1.89
57324--57549	52	4.3	52	84	2	240	26	12	22	38	1.89
58045--58255	116	1.8	115	79	4	244	24	7	31	36	1.84
58344--58401	21	2.8	21	81	5	64	31	13	20	34	1.92
67474--68407	466	2.0	467	99	0	1852	34	11	14	40	1.82
69318--69354	15	2.5	15	90	0	56	59	0	0	40	0.97
69761--69835	34	2.3	32	80	12	91	58	0	0	41	0.98
69774--69819	23	2.0	22	87	4	65	56	0	0	43	0.99
77149--77244	47	2.0	47	97	0	183	26	5	22	45	1.73
77394--77445	21	2.5	21	93	0	86	34	11	17	36	1.86
78403--78429	11	2.5	11	100	0	54	37	0	7	55	1.28
81924--81971	23	2.0	24	84	12	62	50	12	0	37	1.41
83739--83796	25	2.3	25	100	0	116	22	15	6	55	1.64
86264--86305	22	1.9	22	95	0	75	14	19	14	52	1.75
92776--92829	22	2.4	22	90	3	90	27	22	25	24	2.00
94261--94286	13	2.0	13	100	0	52	53	0	0	46	1.00
95354--95425	29	2.4	31	77	6	78	38	2	15	43	1.61
104584--104696	9	13.2	9	67	14	51	13	5	22	59	1.54
104587--104653	24	2.8	24	81	0	71	13	7	17	61	1.55
104623--104662	21	1.9	21	84	0	53	10	10	22	57	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104770--104866	30	3.1	30	72	8	77	12	7	25	54	1.63
104876--105085	6	35.0	6	67	15	60	12	5	18	63	1.48
104789--104893	30	3.5	30	69	7	79	11	7	25	55	1.62
104829--104908	27	3.0	27	74	7	72	11	7	23	57	1.59
104932--105070	9	14.1	9	71	18	64	14	5	17	63	1.47
104922--105082	21	7.9	20	69	15	73	14	5	17	62	1.49
104932--105016	39	2.2	39	79	8	93	15	3	16	64	1.42
104934--105124	18	9.8	18	73	15	69	12	6	17	63	1.48
104961--105086	21	5.7	21	68	12	74	12	5	19	62	1.49
105024--105088	15	4.3	15	76	0	58	12	6	18	63	1.49
105006--105104	45	2.2	45	81	0	117	13	7	17	62	1.51
105078--105133	18	2.9	18	80	14	67	7	10	16	66	1.44
105213--105286	30	2.5	30	100	0	148	9	12	20	58	1.61
105270--105395	24	5.4	24	66	20	79	7	3	26	62	1.36
105354--105395	15	2.8	15	77	0	57	9	4	23	61	1.45
105363--105410	21	2.3	21	96	0	87	10	8	22	58	1.58
105270--105374	3	35.0	3	71	11	54	5	1	28	63	1.27
105352--105455	39	2.7	39	77	3	111	12	7	19	60	1.56
105399--105462	24	2.8	24	84	13	82	10	9	18	60	1.56
105388--105458	24	3.0	24	75	8	63	12	8	18	60	1.57
105503--105631	49	2.7	49	78	5	131	11	8	21	58	1.60
105609--105885	6	46.2	6	75	2	101	8	7	24	59	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105502--105865	15	23.3	15	66	10	113	9	8	22	59	1.55
105696--105863	33	5.0	33	67	17	87	6	8	23	61	1.48
105933--105980	24	2.0	24	91	0	78	16	0	14	68	1.21
105935--106001	24	2.8	24	83	0	71	16	2	16	64	1.42
106135--106218	27	3.1	27	84	0	87	11	9	23	54	1.66
106161--106205	21	2.1	21	91	0	72	11	11	22	55	1.66
106120--106292	33	5.2	33	72	16	99	12	8	23	56	1.62
106166--106212	21	2.2	21	92	0	76	12	8	21	57	1.62
106180--106287	33	3.4	30	75	13	108	10	5	23	61	1.49
106201--106363	3	54.3	3	70	2	58	9	6	25	58	1.55
106543--106639	3	32.7	3	82	2	97	7	2	27	62	1.32
106717--106768	21	2.5	22	78	12	56	11	1	25	61	1.40
106839--106879	12	3.4	12	82	0	55	4	9	31	53	1.55
106848--106974	18	7.4	18	75	15	108	7	8	24	59	1.54
106827--106938	54	2.1	54	81	6	129	11	8	22	57	1.62
106848--106979	36	3.9	35	74	16	132	8	8	23	59	1.53
106913--107002	30	3.2	30	78	13	111	11	8	23	56	1.62
106926--107199	12	23.7	12	65	17	73	11	8	23	56	1.61
106848--107034	54	3.5	56	75	10	167	9	10	23	56	1.62
107066--107201	27	5.3	27	70	13	90	11	8	23	57	1.60
107125--107199	33	2.3	33	86	4	98	13	8	24	54	1.65
107393--107446	24	2.2	24	86	0	72	9	1	33	55	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107409--107443	18	1.9	18	94	0	61	8	2	28	60	1.41
107993--108022	14	2.1	14	93	0	51	16	0	16	66	1.25
108225--108344	9	13.6	9	66	6	57	65	17	5	10	1.42
108222--108397	88	2.0	87	96	1	325	64	17	7	10	1.48
108377--108439	18	3.5	18	73	0	63	55	26	6	11	1.59
108411--108873	3	154.7	3	68	4	83	57	26	6	10	1.56
108602--108793	30	6.2	30	70	9	107	60	21	6	11	1.53
108626--108741	36	3.2	36	79	4	101	60	22	6	11	1.52
108783--108986	80	2.5	80	75	2	210	58	23	6	11	1.57
108887--108987	15	7.2	14	71	17	68	58	22	7	10	1.58
109099--109137	19	2.1	19	85	0	51	74	12	10	2	1.17
109155--109205	21	2.4	21	80	6	59	60	23	7	7	1.50
109270--109335	12	5.5	12	76	7	62	57	21	6	15	1.59
109279--109366	6	14.7	6	75	9	63	62	23	2	11	1.40
109271--109344	24	3.1	24	78	7	87	59	22	5	12	1.53
109279--109844	18	31.5	18	67	15	111	58	22	5	12	1.56
109316--109365	15	3.4	14	83	5	55	68	24	2	6	1.23
109283--112618	12	274.9	12	63	14	201	59	21	5	12	1.54
109308--109589	33	8.6	33	66	19	128	58	23	5	12	1.54
109489--109542	21	2.6	21	81	0	63	61	24	7	7	1.49
109489--109848	6	60.3	6	70	3	80	58	23	5	12	1.55
109535--109583	21	2.3	21	85	0	62	61	24	2	12	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109534--109779	57	4.4	57	71	10	164	58	22	6	13	1.57
109637--109757	27	4.5	27	75	6	84	61	20	5	11	1.50
109625--109781	30	5.2	29	73	11	111	60	21	5	12	1.52
110030--110288	6	43.2	6	69	3	90	58	25	9	6	1.54
110008--110150	51	2.8	51	78	0	151	60	24	8	6	1.51
110030--111012	27	35.2	27	65	17	136	59	22	7	10	1.54
110188--110288	21	4.5	24	69	14	61	58	22	7	10	1.58
110209--110288	21	3.8	21	75	6	72	60	23	6	10	1.52
110059--113486	15	225.7	15	64	13	319	59	21	5	12	1.54
110411--110970	3	188.0	3	67	6	102	61	22	5	10	1.50

Tables:   1   2   3