genome.fa.s13010.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013010.1 Kokia drynarioides strain JFW-HI SEQ_128028, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  507880

Tables:   1   2   3   

This is table  2  of  3  ( 264 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
110724--110882	56	2.7	58	84	8	205	61	20	4	14	1.50
110724--110885	59	2.8	56	89	5	225	61	20	4	14	1.50
111200--112743	3	516.7	3	68	7	150	60	21	5	12	1.51
111712--111817	25	4.3	25	74	12	85	66	22	1	9	1.31
111948--112002	26	2.2	24	81	12	58	63	18	3	14	1.44
110765--112618	18	101.7	18	64	14	232	60	21	5	13	1.52
112905--112956	3	17.3	3	83	0	59	63	26	0	9	1.25
112889--113000	24	4.7	24	75	4	91	61	21	2	14	1.45
112907--112995	9	9.6	9	74	13	74	62	22	2	12	1.40
112895--112989	12	8.2	12	68	13	56	61	23	3	12	1.46
113033--113079	21	2.2	21	84	0	58	63	17	4	14	1.45
113114--113222	6	18.2	6	80	6	87	60	29	0	9	1.34
113117--113181	24	2.7	24	97	0	121	58	30	0	10	1.32
113376--113486	3	37.0	3	76	3	71	64	21	0	12	1.32
113376--113465	18	5.0	18	77	5	92	64	23	1	11	1.32
113390--113488	21	5.1	20	73	11	80	65	20	1	13	1.32
113523--113584	21	3.0	20	79	6	61	61	22	1	14	1.42
113530--113581	24	2.2	25	82	10	72	63	19	1	15	1.40
113604--113656	21	2.5	21	78	0	61	64	20	1	13	1.38
117093--117245	19	8.1	19	79	0	153	25	26	16	31	1.96
117106--117245	57	2.5	57	84	0	172	25	27	17	30	1.97
122897--122977	3	27.0	3	94	0	144	65	0	2	32	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
124518--124575	15	3.9	15	72	0	53	60	25	6	6	1.48
124551--124600	21	2.4	21	75	0	55	60	22	8	10	1.55
124577--124630	15	3.6	15	75	9	56	51	20	14	12	1.75
124626--124730	27	3.9	27	75	0	84	62	21	4	10	1.45
124632--124717	39	2.2	39	82	0	100	62	23	3	10	1.42
124658--124916	3	86.0	3	69	0	68	61	23	4	11	1.48
124748--124815	27	2.5	27	85	4	93	58	25	5	10	1.53
124846--124981	21	6.7	21	69	11	95	62	22	3	11	1.44
124844--124980	15	9.5	15	70	9	61	62	22	3	10	1.43
124846--124980	27	5.0	27	65	9	60	62	22	3	10	1.42
145115--145260	79	1.8	79	86	0	211	25	16	25	32	1.96
151492--151587	48	2.0	48	97	0	183	30	14	13	41	1.84
174428--174504	38	2.0	38	100	0	154	23	22	20	33	1.97
182785--182858	36	2.1	36	100	0	148	40	12	18	28	1.87
188739--188784	23	2.0	23	84	12	60	19	26	21	32	1.97
189206--189244	21	1.9	21	94	5	71	43	15	15	25	1.86
202772--202803	3	10.3	3	93	6	55	65	3	0	31	1.08
203236--203305	32	2.2	32	94	0	122	38	10	11	40	1.75
211439--211464	4	6.5	4	100	0	52	73	0	26	0	0.84
220490--220531	22	2.0	22	85	4	59	2	14	0	83	0.75
224211--224236	13	2.0	13	100	0	52	15	23	15	46	1.83
239119--239156	18	2.1	18	95	0	67	15	18	26	39	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
240332--240373	20	2.0	22	90	9	70	0	59	0	40	0.97
240425--240452	6	4.7	6	100	0	56	0	64	0	35	0.94
241194--241296	9	10.3	10	71	26	69	49	0	0	50	1.00
241191--241303	20	5.6	20	70	24	78	47	0	0	51	1.06
241191--241303	51	2.2	50	93	4	192	47	0	0	51	1.06
241255--241297	22	2.0	22	90	4	70	51	0	0	48	1.00
242332--242395	31	2.0	32	84	6	85	42	7	1	48	1.41
247817--248712	93	9.4	93	70	11	492	25	22	16	34	1.95
247714--248732	192	5.3	192	83	2	1122	25	22	17	35	1.95
247714--248726	381	2.6	380	81	3	1192	25	22	17	35	1.95
248896--249109	49	4.3	49	88	0	275	21	28	14	35	1.92
248896--249135	49	4.9	49	86	3	259	22	26	14	36	1.92
252797--252894	29	3.2	29	70	20	83	64	3	9	23	1.37
256620--256668	21	2.3	21	71	0	53	24	24	0	51	1.49
257676--257774	12	8.3	12	76	6	85	66	20	7	6	1.37
257662--257750	47	2.0	46	84	10	121	65	20	7	6	1.42
257676--257774	35	2.8	35	81	3	108	66	20	7	6	1.37
257800--257896	22	4.8	21	76	16	80	68	19	5	7	1.33
257809--257841	17	1.9	17	93	0	57	66	15	9	9	1.43
257826--257896	22	3.3	20	84	7	88	67	19	4	8	1.34
260486--260522	3	12.7	3	94	5	67	32	32	0	35	1.58
264637--264661	3	8.3	3	100	0	50	32	32	0	36	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
267436--267485	17	2.8	17	90	6	73	74	0	2	24	0.93
267436--267487	26	2.0	26	84	3	68	73	0	1	25	0.94
267513--267618	10	11.4	9	71	17	58	64	1	4	29	1.25
267455--267608	57	2.7	58	83	6	183	63	1	5	29	1.27
267437--267620	9	19.6	10	69	18	78	64	1	4	29	1.24
267983--268285	88	3.3	88	76	13	256	33	7	21	37	1.83
273125--273174	19	2.6	19	100	0	100	36	24	0	40	1.55
278168--278219	15	3.5	15	84	5	79	34	0	1	63	1.06
278167--278263	29	3.3	29	89	1	149	30	1	8	59	1.33
278183--278263	14	5.6	14	73	12	65	30	1	8	59	1.35
278168--278256	15	6.1	15	72	5	65	31	1	6	60	1.30
285574--285651	25	3.3	23	86	11	106	0	21	0	78	0.76
285602--285645	14	3.4	14	75	18	58	0	27	0	72	0.85
293449--293478	14	2.2	14	94	5	53	36	10	23	30	1.87
295006--295043	9	4.6	9	84	15	55	0	15	0	84	0.63
295005--295045	18	2.4	17	92	8	66	0	17	0	82	0.66
295625--295665	18	2.3	18	87	8	57	53	12	19	14	1.72
299238--299267	14	2.2	14	94	5	53	36	10	23	30	1.87
305868--305944	37	2.1	37	90	4	120	29	25	18	25	1.98
305891--305976	37	2.3	37	82	4	93	30	25	19	24	1.98
305960--306060	38	2.7	38	77	7	125	33	25	12	27	1.93
306043--306100	26	2.3	26	87	3	82	29	15	24	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
316513--316561	23	2.1	23	81	7	55	55	0	12	32	1.37
323214--323289	33	2.3	33	86	4	100	44	1	5	48	1.33
330798--330829	16	2.0	16	100	0	64	31	12	18	37	1.88
333018--333051	16	2.1	17	88	5	52	35	23	8	32	1.86
335434--335507	29	2.5	30	80	10	82	54	8	0	37	1.30
337205--337265	21	3.0	21	80	7	63	32	0	18	49	1.48
337534--337559	6	4.3	6	100	0	52	50	0	0	50	1.00
340958--340987	15	2.0	15	93	0	51	43	13	20	23	1.86
341835--341962	65	2.0	64	90	4	204	33	20	11	34	1.89
347839--347987	78	1.9	78	93	1	255	42	4	4	48	1.42
352778--352845	24	2.8	24	88	0	100	30	20	22	26	1.98
355221--355284	32	2.0	32	96	0	119	35	12	23	28	1.91
357510--357652	77	1.8	77	93	1	250	48	5	4	41	1.48
384130--384236	10	10.8	10	68	17	55	38	18	3	39	1.69
384131--384236	20	4.9	21	70	23	85	37	18	3	39	1.69
384018--384327	68	4.7	68	79	8	318	39	19	4	36	1.73
384152--384295	59	2.5	59	87	1	191	36	20	4	38	1.72
384094--384327	127	1.8	127	87	1	344	36	20	4	38	1.73
384266--384301	10	3.6	10	84	0	54	36	22	2	38	1.69
384822--384909	36	2.4	36	88	0	131	37	22	12	27	1.90
384850--384923	36	2.1	36	86	0	103	36	28	10	24	1.89
395164--395195	16	2.0	16	100	0	64	56	0	18	25	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
395396--395431	18	2.1	18	89	5	56	41	0	22	36	1.54
395728--395764	18	2.1	18	89	0	56	48	0	27	24	1.51
395867--395970	37	2.7	39	77	8	106	21	16	26	35	1.94
396626--396654	2	14.5	2	100	0	58	51	0	0	48	1.00
402710--402745	18	2.1	18	89	5	56	41	0	25	33	1.55
406156--406196	15	2.7	15	85	10	57	41	4	0	53	1.22
406156--406195	16	2.7	15	88	7	55	42	2	0	55	1.13
410588--410660	38	1.9	38	97	0	137	42	9	9	38	1.70
413633--413732	43	2.3	43	89	0	155	29	14	14	43	1.84
414560--414586	13	2.1	13	100	0	54	22	7	14	55	1.64

Tables:   1   2   3