genome.fa.s14333.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014333.1 Kokia drynarioides strain JFW-HI SEQ_129370, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1084406

Tables:   1   2   3   

This is table  1  of  3  ( 345 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
797--1018	37	6.0	37	81	2	214	14	20	31	33	1.93
803--982	74	2.4	74	84	0	243	13	21	31	33	1.92
1848--1881	12	2.9	12	91	4	52	17	26	35	20	1.95
6240--6413	6	28.7	6	84	9	138	13	1	16	68	1.26
6285--6319	3	11.7	3	87	0	52	25	0	5	68	1.11
6318--6367	3	16.7	3	100	0	100	0	0	32	68	0.90
10130--10188	3	19.7	3	96	0	109	33	1	0	64	1.04
14080--14109	2	15.5	2	93	6	53	50	0	0	50	1.00
14716--14763	17	2.8	17	83	0	60	52	6	16	25	1.67
15150--15234	3	28.3	3	75	17	79	0	36	0	63	0.95
15150--15232	18	4.6	18	81	12	91	0	36	0	63	0.94
18689--18731	22	2.0	22	90	0	68	44	25	20	9	1.81
25806--25848	22	2.0	22	90	0	68	44	25	20	9	1.81
30776--30808	9	3.7	9	100	0	66	9	0	33	57	1.30
34497--34554	27	2.1	27	96	0	107	29	0	27	43	1.55
35125--35180	23	2.4	23	81	3	67	21	12	1	64	1.36
40979--41029	23	2.1	23	82	10	57	64	0	1	33	1.05
43553--43583	13	2.3	14	94	5	55	32	0	0	67	0.91
43940--43977	20	2.0	20	85	15	53	42	0	0	57	0.98
43937--43981	22	2.0	22	84	16	58	44	0	0	55	0.99
44246--44318	30	2.5	30	93	4	123	43	2	1	52	1.24
46958--46998	21	1.9	22	85	5	57	60	0	4	34	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47349--47516	83	2.0	83	92	0	282	27	29	11	31	1.92
52414--52459	19	2.4	19	88	3	74	26	15	8	50	1.73
53313--53483	38	4.5	38	80	2	184	23	23	18	33	1.97
53358--53483	19	6.6	19	91	0	135	24	22	19	33	1.97
53313--53483	57	3.0	57	80	1	182	23	23	18	33	1.97
53607--53824	108	2.0	108	87	1	312	27	26	19	26	1.99
67042--67072	16	1.9	16	93	0	53	61	0	16	22	1.34
69146--69189	21	2.1	21	100	0	88	27	20	9	43	1.82
75463--75520	29	2.0	29	100	0	116	44	0	24	31	1.54
82579--82633	21	2.5	21	85	8	65	38	23	12	25	1.90
82952--83429	241	2.0	240	88	0	704	34	20	19	25	1.96
91860--91904	14	3.2	14	84	6	56	71	0	28	0	0.87
92985--93024	2	20.0	2	100	0	80	50	0	0	50	1.00
97699--97733	17	2.0	18	88	5	54	68	0	31	0	0.90
101174--101239	24	2.8	24	86	2	98	30	22	25	21	1.99
106017--106144	34	3.8	34	78	6	98	32	10	14	42	1.78
106048--106144	32	2.9	34	78	6	99	36	9	13	41	1.76
112148--112203	25	2.2	25	78	6	60	51	3	19	25	1.62
126071--126110	3	13.3	3	100	0	80	67	0	0	32	0.91
131344--131388	23	2.0	23	87	12	67	64	0	0	35	0.94
131925--132342	144	3.0	139	83	5	520	27	19	20	32	1.97
136691--136729	18	2.2	16	86	13	51	0	33	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
142009--142042	16	2.1	17	89	10	54	38	0	11	50	1.39
142210--142521	37	8.6	36	71	13	214	25	19	13	40	1.89
142207--142517	73	4.3	71	79	8	290	25	19	13	41	1.88
144569--144615	24	2.0	24	87	4	69	55	4	6	34	1.45
148647--148702	29	1.9	29	82	7	69	42	3	1	51	1.29
149569--149609	20	2.0	20	95	0	73	31	24	19	24	1.98
155619--155644	5	5.2	5	100	0	52	57	0	0	42	0.98
160467--160537	34	2.0	34	89	5	106	54	7	0	38	1.27
160474--160528	17	3.2	17	80	10	76	52	5	0	41	1.24
160765--161134	191	1.9	192	83	3	478	38	12	17	31	1.88
162804--162842	7	5.6	7	82	11	53	28	0	0	71	0.86
162793--162844	22	2.5	20	81	12	59	30	3	1	63	1.23
162811--162840	15	2.0	15	93	0	51	30	0	0	70	0.88
162804--162854	20	2.4	21	87	12	70	27	1	0	70	0.98
165053--165247	52	3.7	52	82	4	248	28	15	23	31	1.96
167314--167368	15	3.7	15	78	9	67	23	10	30	34	1.89
171950--171974	11	2.3	11	100	0	50	8	8	0	84	0.79
175303--175366	20	3.2	20	84	8	85	39	6	9	45	1.62
185592--185633	21	2.0	21	95	0	75	40	19	7	33	1.78
195664--195712	15	3.3	15	80	11	64	26	20	28	24	1.99
197253--197286	5	6.6	5	96	3	59	38	0	0	61	0.96
197314--197370	21	2.7	21	74	17	64	29	3	3	63	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
211682--211774	21	4.4	21	76	8	100	34	29	7	29	1.85
211682--211774	42	2.2	42	100	0	186	34	29	7	29	1.85
212496--212746	24	10.5	24	80	0	277	23	23	16	37	1.94
220098--220128	13	2.5	13	94	5	55	61	0	0	38	0.96
230651--230690	19	2.0	21	85	9	57	17	5	12	65	1.44
230726--230775	17	2.9	17	81	0	64	20	18	12	50	1.78
234487--234529	6	7.0	6	89	10	61	0	20	0	79	0.74
234489--234528	20	2.1	19	95	4	71	0	22	0	77	0.77
252593--252623	14	2.2	14	94	0	53	48	0	0	51	1.00
256457--256515	17	3.5	17	100	0	118	37	30	22	10	1.87
261204--261328	24	5.5	22	73	20	96	36	12	16	35	1.85
261250--261339	24	3.8	24	81	14	114	35	12	15	36	1.85
263384--263424	7	5.9	7	100	0	82	43	0	26	29	1.55
267727--267775	18	2.7	18	78	15	55	48	0	0	51	1.00
269728--269753	12	2.2	12	100	0	52	69	0	0	30	0.89
270481--270509	6	4.8	6	100	0	58	82	0	0	17	0.66
270465--270523	18	3.3	18	76	2	57	69	0	1	28	0.98
278789--278843	19	2.9	17	86	13	65	3	18	0	78	0.90
290261--290316	21	2.7	21	88	0	76	51	7	33	7	1.56
290267--290328	18	3.3	18	81	6	70	46	9	33	9	1.69
292473--292503	16	1.9	16	93	0	53	54	3	3	38	1.32
293120--293144	12	2.1	12	100	0	50	36	8	16	40	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
301169--301217	22	2.2	22	100	0	98	26	24	34	14	1.94
305043--305073	16	1.9	16	93	0	53	22	16	0	61	1.34
306684--306897	106	2.0	107	90	4	344	28	15	31	25	1.96
308645--308736	37	2.5	37	78	0	94	31	28	16	23	1.96
309637--309667	16	1.9	16	93	0	53	22	16	0	61	1.34
311363--311472	55	2.0	55	100	0	220	43	7	27	21	1.79
312479--312855	191	2.0	192	94	1	659	35	16	13	33	1.89
319027--319079	21	2.5	21	100	0	106	18	18	35	26	1.95
319071--319175	55	1.9	56	84	2	140	26	20	25	26	1.99
327810--327843	18	1.9	17	88	5	50	23	11	8	55	1.63
335224--335278	17	3.1	17	86	7	65	69	0	29	1	0.99
343756--343819	18	3.6	17	69	19	51	57	10	3	28	1.48
353763--353813	25	2.0	25	100	0	102	37	27	15	19	1.92
354206--354265	29	2.1	28	82	14	70	63	6	11	18	1.49
362221--362295	31	2.4	31	84	2	96	41	2	0	56	1.13
362985--363044	31	2.0	29	87	6	84	56	0	1	41	1.09
363939--363993	23	2.6	21	83	11	67	21	3	0	74	0.97
369461--369684	68	3.3	68	89	0	324	29	21	14	33	1.94
369427--369634	33	6.2	33	70	13	138	30	22	14	33	1.93
372125--372183	29	2.0	30	83	3	75	27	6	16	49	1.71
372358--372414	29	1.9	30	82	3	71	35	14	14	36	1.86
372956--372980	13	1.9	13	100	0	50	36	0	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
375753--375816	3	21.3	3	100	0	128	67	0	0	32	0.91
382087--382117	16	1.9	16	93	0	53	25	16	41	16	1.88
382964--383119	66	2.4	66	78	0	159	31	16	23	29	1.96
387944--387994	23	2.2	24	82	10	61	47	3	1	47	1.32
387844--388370	147	3.6	146	89	4	769	45	9	3	41	1.54
387990--388227	52	4.7	51	69	13	159	45	9	3	41	1.53
388894--388950	3	18.7	3	92	3	96	68	29	0	1	1.00
400213--400260	25	1.9	25	87	8	71	45	2	12	39	1.54
400127--400323	94	2.0	97	84	4	256	44	3	9	42	1.53
399990--400459	242	2.0	242	84	6	611	42	3	8	45	1.51

Tables:   1   2   3