genome.fa.s14333.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014333.1 Kokia drynarioides strain JFW-HI SEQ_129370, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1084406

Tables:   1   2   3   

This is table  3  of  3  ( 345 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
796922--797215	109	2.7	108	77	10	310	21	19	21	37	1.95
798012--798059	23	2.1	23	88	3	71	70	10	4	14	1.29
798070--798145	12	6.4	12	76	8	66	72	18	2	6	1.18
798048--798095	20	2.3	21	79	10	55	70	18	0	10	1.15
798089--798147	15	3.8	15	76	13	57	74	16	3	5	1.13
798108--798145	9	4.2	9	86	6	51	78	18	0	2	0.86
802206--802302	37	2.6	38	91	4	153	47	0	2	50	1.12
802352--802391	21	1.9	21	84	0	53	15	25	2	57	1.50
803521--803592	23	3.1	22	84	7	90	44	37	2	15	1.61
804049--804087	18	2.2	17	86	4	51	30	2	0	66	1.05
808575--808608	14	2.4	14	90	9	52	0	26	0	73	0.83
813632--813673	17	2.4	18	80	4	50	54	7	11	26	1.62
814080--814122	12	3.3	12	76	17	50	2	39	0	58	1.11
814080--814140	27	2.2	28	82	5	72	3	36	3	57	1.31
829099--829135	17	2.2	17	90	0	56	59	8	10	21	1.56
830609--830641	16	2.1	16	100	0	66	12	9	18	60	1.57
834780--834905	61	2.1	61	90	0	198	44	11	12	31	1.78
862147--862211	7	9.3	7	100	0	130	0	29	0	70	0.87
864748--864788	22	1.9	22	85	5	57	58	7	19	14	1.59
876333--876442	40	2.7	39	83	5	130	25	13	28	32	1.94
877651--877735	20	4.2	20	73	10	66	47	12	5	34	1.66
877775--877809	18	1.9	18	88	0	52	34	17	11	37	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
889673--889712	21	1.9	21	94	0	71	42	7	10	40	1.67
889678--889719	21	2.1	20	86	8	59	45	7	11	35	1.69
890260--890302	23	1.9	23	85	4	61	53	2	6	37	1.41
892162--892206	19	2.4	19	81	7	56	37	0	4	57	1.19
893015--893065	16	3.3	15	78	10	50	15	7	1	74	1.13
893008--893067	21	2.8	22	85	7	61	15	8	1	75	1.12
893017--893047	16	1.9	16	93	0	53	16	6	0	77	0.97
903107--903148	22	1.9	22	85	0	57	2	7	26	64	1.32
903026--903162	20	7.1	19	69	23	99	5	5	21	67	1.32
903095--903182	34	2.6	34	80	10	90	6	6	20	65	1.39
903057--903171	54	2.2	51	81	10	142	6	6	20	67	1.34
904430--904495	29	2.3	29	94	0	123	25	15	15	43	1.85
907138--907473	167	2.0	167	98	0	645	27	15	22	33	1.95
916218--916428	30	7.1	27	76	15	154	41	16	3	37	1.67
916225--916428	60	3.4	58	86	8	252	41	15	3	39	1.64
916218--916427	90	2.3	88	80	10	239	41	16	3	38	1.66
927205--927391	40	4.7	39	72	15	134	33	26	16	24	1.96
927180--927411	79	2.9	78	81	8	247	32	25	16	25	1.96
927180--927394	80	2.7	79	82	5	238	33	26	15	25	1.95
927861--927890	11	2.6	12	94	5	53	26	0	0	73	0.84
929073--929340	60	4.5	59	80	10	321	41	20	2	35	1.67
929078--929340	89	2.9	88	83	5	334	40	20	2	36	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
929077--929339	30	8.8	29	81	8	271	40	20	2	36	1.66
929113--929339	119	1.9	118	86	6	300	41	20	3	35	1.68
931637--931688	23	2.4	21	83	6	59	36	0	7	55	1.29
932371--932427	20	2.8	20	89	0	87	22	43	15	17	1.87
933386--933441	13	4.5	12	72	16	51	28	3	0	67	1.07
938467--938561	5	18.8	5	76	14	63	80	0	17	2	0.82
938454--938550	23	4.2	22	75	18	99	79	0	16	4	0.88
938495--938562	7	9.7	7	83	13	79	83	0	16	0	0.64
938454--938556	9	11.6	9	72	13	70	79	0	16	3	0.87
938494--938562	16	4.3	15	85	12	93	84	0	15	0	0.63
938466--938563	23	4.3	22	75	18	76	79	0	18	2	0.83
939573--939806	50	4.7	49	69	15	138	36	18	19	26	1.94
939534--939806	101	2.7	101	85	2	327	36	17	19	26	1.94
940817--940936	43	2.8	42	84	5	143	32	23	9	35	1.86
940901--941219	42	7.6	42	87	0	458	28	25	11	33	1.91
942381--942643	42	6.5	42	80	11	282	26	25	9	38	1.87
942428--942494	32	2.1	32	100	0	134	25	25	5	43	1.77
942385--942595	74	2.7	76	86	8	266	26	24	9	40	1.84
945957--946011	20	2.7	20	82	2	74	14	49	20	16	1.80
947074--947107	13	2.7	12	90	9	50	20	0	0	79	0.73
957510--957599	41	2.3	39	88	7	130	27	25	10	36	1.88
960358--960414	20	2.8	19	82	15	69	26	24	33	15	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
960659--960684	11	2.4	11	100	0	52	61	38	0	0	0.96
962791--962824	16	2.2	16	89	5	52	29	8	8	52	1.62
979276--979407	69	1.9	70	88	1	203	40	20	9	29	1.85
980428--980888	43	10.7	43	79	3	419	42	19	16	21	1.89
980843--981408	282	2.0	283	92	0	954	38	19	6	35	1.77
996356--996404	23	2.1	23	92	0	80	24	24	4	46	1.69
996973--997005	14	2.2	16	89	10	52	15	9	0	75	1.03
1001394--1001419	13	2.0	13	100	0	52	84	0	15	0	0.62
1002724--1002762	17	2.3	17	86	0	51	41	20	25	12	1.88
1003935--1004136	95	2.1	95	90	1	318	42	7	8	41	1.64
1004033--1004226	107	1.8	108	85	4	277	42	7	7	42	1.60
1004156--1004526	123	3.0	123	85	5	487	42	6	11	39	1.66
1010810--1010847	18	2.1	19	85	5	51	42	26	13	18	1.87
1018235--1018268	16	2.1	16	88	0	50	29	8	23	38	1.85
1020908--1021057	81	1.9	81	97	0	282	39	18	3	38	1.68
1021109--1021259	56	2.6	55	78	12	144	43	19	9	27	1.81
1027741--1027783	18	2.3	18	84	4	50	46	11	11	30	1.76
1034012--1034050	17	2.2	18	86	13	55	46	0	2	51	1.14
1036830--1037192	176	2.1	176	93	0	618	42	9	12	34	1.76
1039570--1039685	23	5.0	23	81	4	135	11	26	22	39	1.88
1057032--1057275	71	3.4	71	70	16	216	35	2	6	55	1.38
1056980--1057305	142	2.3	143	97	1	609	37	2	6	53	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1057211--1057402	97	2.0	97	87	2	278	35	4	4	55	1.40
1057069--1057667	239	2.5	240	94	2	1032	36	3	6	54	1.42
1057451--1057748	97	3.0	97	81	9	325	36	5	5	53	1.45
1057561--1057760	107	1.9	107	86	8	291	36	5	6	51	1.51
1058647--1058693	22	2.1	22	84	0	58	34	2	17	46	1.59
1058821--1058871	23	2.2	23	89	0	84	29	7	25	37	1.84
1058926--1058989	32	2.0	32	100	0	128	25	28	6	40	1.79
1060989--1061096	53	2.0	53	100	0	216	37	25	10	26	1.88
1062848--1062912	33	2.0	33	84	0	85	21	29	24	24	1.99
1069822--1069956	31	4.5	31	74	11	118	28	16	8	47	1.75
1069822--1070014	91	2.1	89	81	1	224	26	15	10	47	1.78
1070240--1070317	27	2.7	30	77	16	94	64	6	0	29	1.18
1074780--1074885	15	7.5	15	66	23	50	55	0	11	33	1.35
1074780--1074890	42	2.6	42	87	8	172	54	0	10	34	1.35
1077152--1077189	16	2.4	16	86	8	51	28	5	13	52	1.61
1083720--1084364	24	26.9	24	74	1	398	23	25	14	36	1.93
1083856--1084364	48	10.6	48	82	0	478	22	25	15	36	1.93

Tables:   1   2   3

The End!