genome.fa.s14333.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014333.1 Kokia drynarioides strain JFW-HI SEQ_129370, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1084406

Tables:   1   2   3   

This is table  2  of  3  ( 345 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
400233--400515	142	2.0	144	83	6	362	40	3	9	45	1.54
400390--400638	129	2.0	121	87	8	356	42	4	10	43	1.57
401197--401238	16	2.7	16	88	3	59	16	11	4	66	1.40
401208--401240	16	2.1	16	100	0	66	18	12	6	63	1.48
401860--401898	21	1.9	21	84	5	53	48	5	10	35	1.59
407317--407363	24	2.0	24	91	0	76	42	0	10	46	1.38
407315--407365	22	2.2	23	86	6	77	47	0	9	43	1.36
407846--407932	46	1.9	45	81	6	104	49	1	4	44	1.30
407856--407946	46	2.0	46	80	8	105	49	0	5	45	1.25
407856--407946	45	2.0	46	80	6	105	49	0	5	45	1.25
407387--408038	141	4.6	144	78	10	612	45	2	7	44	1.45
408753--408778	3	8.7	3	100	0	52	34	0	0	65	0.93
420386--420462	37	2.1	37	82	4	93	28	25	14	31	1.95
422795--423050	122	2.1	123	91	3	408	36	12	8	42	1.73
429646--429905	123	2.1	125	87	5	377	37	10	8	43	1.69
435988--436044	16	3.6	16	73	0	51	66	3	1	28	1.18
438142--438198	16	3.6	16	73	0	51	66	3	1	28	1.18
438179--438236	26	2.2	25	77	14	64	65	5	0	29	1.14
449479--449529	25	2.0	25	100	0	102	41	15	11	31	1.83
458472--458662	95	2.0	95	92	0	319	33	16	14	35	1.90
464930--464975	13	3.8	13	75	13	53	54	0	4	41	1.20
465542--465609	32	2.2	32	97	2	129	27	26	22	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
471790--471842	21	2.5	22	82	11	67	24	24	18	32	1.97
475932--475965	13	2.6	13	90	0	50	70	11	0	17	1.16
480109--480150	20	2.1	20	90	0	66	30	38	11	19	1.88
481560--481602	21	1.9	24	86	13	65	46	0	11	41	1.40
482564--482606	16	2.6	16	79	13	52	9	4	23	62	1.44
500145--500295	80	1.9	80	88	0	230	23	19	26	31	1.98
502641--502767	56	2.3	56	91	0	200	24	23	26	25	2.00
503872--503977	56	1.9	56	86	7	153	31	25	21	21	1.98
504403--504437	18	2.1	17	89	10	54	37	5	20	37	1.76
510065--510277	39	5.5	39	77	2	212	38	23	15	22	1.93
510065--510277	78	2.7	78	84	4	250	38	23	15	22	1.93
523757--524059	39	7.9	38	83	5	333	35	20	17	26	1.95
523796--524059	76	3.4	76	86	4	291	36	20	17	25	1.94
527519--527561	3	14.3	3	100	0	86	67	0	0	32	0.91
530218--530279	28	2.2	29	80	8	74	35	24	8	32	1.85
532527--532640	57	2.0	59	86	6	162	28	18	7	45	1.75
539311--539338	14	2.0	14	100	0	56	42	0	28	28	1.56
547331--547383	20	2.8	19	74	20	58	41	1	3	52	1.30
547285--547432	77	1.9	80	83	10	198	40	2	4	52	1.37
548681--548815	67	2.0	67	95	0	243	52	5	9	31	1.58
550300--550405	42	2.5	42	82	1	113	20	19	33	26	1.97
551546--551595	25	2.0	25	84	4	64	38	10	10	42	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
551823--551893	37	1.9	36	86	8	99	52	2	1	43	1.24
554390--554465	37	2.1	37	100	0	152	40	27	5	26	1.77
556987--557067	38	2.1	38	86	8	112	43	2	3	50	1.33
560658--560973	146	2.2	146	80	5	336	26	21	19	32	1.97
563834--563897	31	2.1	30	85	8	85	39	12	4	43	1.63
563847--563907	31	2.0	31	84	9	81	36	14	4	44	1.67
564485--564528	23	1.9	23	85	0	61	45	0	9	45	1.35
564577--564611	18	1.9	18	88	0	52	60	5	0	34	1.21
567766--567812	18	2.6	18	82	0	58	40	2	2	55	1.24
568013--568116	31	3.5	31	92	5	162	37	11	7	43	1.70
572621--572832	56	3.8	56	82	3	257	25	17	26	30	1.98
572626--572832	112	1.8	112	86	2	299	25	17	26	30	1.97
579350--579520	36	4.8	36	83	0	216	29	8	23	38	1.84
579765--579870	50	2.1	50	91	1	169	26	13	29	31	1.94
581937--581998	10	6.0	10	72	12	54	4	19	0	75	0.97
582567--582606	17	2.4	17	91	0	62	67	15	7	10	1.41
583008--583056	21	2.3	20	83	10	62	0	34	0	65	0.93
583011--583054	12	3.7	12	81	0	52	0	36	0	63	0.95
592058--592180	48	2.6	48	90	0	183	25	8	13	52	1.70
592591--592754	80	2.1	79	86	2	222	42	17	12	27	1.86
596333--596422	45	2.0	45	93	0	153	35	14	28	21	1.92
602090--602132	21	2.0	21	82	8	52	67	0	30	2	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
607737--607779	21	2.0	21	95	0	77	18	20	18	41	1.90
609578--609606	14	2.1	14	100	0	58	6	41	6	44	1.58
626282--626320	21	1.9	21	89	5	62	12	12	7	66	1.43
635675--635812	68	2.0	68	100	0	276	36	23	16	23	1.94
636063--636147	25	3.4	25	83	0	89	43	20	12	23	1.86
665415--665453	21	1.9	21	89	5	62	66	7	12	12	1.43
674847--674888	21	2.0	21	95	0	75	35	26	14	23	1.93
681879--681937	25	2.4	25	80	11	68	38	0	3	57	1.15
682659--682780	61	2.0	61	100	0	244	34	6	16	42	1.74
684095--684129	18	1.9	18	88	0	52	42	25	2	28	1.69
688390--688477	38	2.3	38	78	5	99	30	22	14	31	1.94
726784--727063	52	5.4	52	90	1	393	27	15	22	35	1.93
728808--728986	38	4.8	36	73	12	130	30	15	23	31	1.95
728824--728984	38	4.3	38	80	3	184	30	14	23	31	1.94
728823--728986	75	2.2	75	93	0	274	30	14	23	31	1.94
730926--730981	17	3.3	17	79	0	67	46	12	19	21	1.83
731511--731575	3	21.7	3	100	0	130	33	0	32	33	1.58
732705--732750	22	2.0	24	87	8	69	26	21	28	23	1.99
740749--740896	39	3.8	39	88	0	215	22	13	22	41	1.88
740682--740908	78	2.9	77	77	4	215	24	13	19	42	1.88
741003--741164	73	2.2	75	82	7	188	27	27	14	30	1.95
742802--742843	17	2.4	18	84	7	61	71	2	2	23	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
743632--743667	18	2.0	18	89	10	56	47	0	0	52	1.00
743680--743721	15	2.8	15	80	19	52	59	0	2	38	1.10
744653--744715	30	2.1	30	84	0	81	58	4	0	36	1.19
745287--745337	23	2.2	23	78	0	57	39	3	7	49	1.51
750830--750883	26	2.1	26	89	0	81	29	20	20	29	1.98
750870--750970	38	2.7	38	84	4	116	31	11	20	35	1.89
750897--750970	38	1.9	38	94	0	130	35	9	20	35	1.85
750992--751068	37	2.1	36	83	11	95	32	20	22	24	1.98
752566--752652	34	2.6	34	81	1	113	27	20	21	29	1.98
752751--752880	46	2.8	45	86	3	170	32	9	26	31	1.88
752786--752857	21	3.2	21	70	14	63	34	2	27	34	1.72
752795--752868	22	3.3	22	70	20	62	31	2	33	32	1.72
752779--752880	46	2.2	46	94	0	177	33	6	27	32	1.83
752789--752862	24	3.2	24	67	21	66	35	2	28	33	1.72
752779--752892	46	2.5	46	89	0	138	32	7	28	31	1.86
754026--754056	15	2.1	15	100	0	62	41	0	32	25	1.56
757511--757699	105	1.8	103	84	8	260	21	5	6	66	1.35
759298--759322	2	12.5	2	100	0	50	52	0	0	48	1.00
761211--761286	40	1.9	40	91	5	127	46	21	14	18	1.84
761254--761496	41	5.9	41	81	3	267	43	17	20	18	1.88
762150--762202	18	3.1	16	75	17	52	24	1	3	69	1.15
763523--763635	42	2.6	42	80	2	109	47	14	21	16	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
763779--763841	17	3.7	17	97	0	117	6	47	3	42	1.44
765084--765167	26	3.2	26	74	12	89	47	8	1	42	1.41
765078--765191	54	2.1	52	79	9	122	49	7	2	40	1.46
771007--771144	66	2.1	66	84	0	186	42	17	23	15	1.88
776963--777206	52	4.7	51	77	5	213	29	13	22	34	1.93
776967--777166	105	1.9	104	85	1	274	29	14	22	34	1.93
784462--784516	28	1.9	29	96	3	103	10	3	20	65	1.39
785979--786081	34	3.0	33	80	7	107	47	0	32	19	1.56
794480--794950	234	2.0	234	99	0	933	28	14	20	36	1.92
796283--796375	40	2.3	41	87	5	136	26	6	24	41	1.79

Tables:   1   2   3