genome.fa.s14446.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014446.1 Kokia drynarioides strain JFW-HI SEQ_129485, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  684930

Tables:   1   2   3   

This is table  2  of  3  ( 286 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
309005--309064	28	2.1	28	84	0	75	58	13	3	25	1.50
309439--309464	3	8.7	3	100	0	52	34	34	0	30	1.58
321181--321232	25	2.1	25	82	10	63	9	7	1	80	0.97
321725--321770	23	2.0	24	86	4	67	52	2	0	45	1.13
321741--321806	30	2.1	31	83	5	80	34	1	1	62	1.14
323562--323601	5	8.0	5	100	0	80	0	20	0	80	0.72
323903--323929	4	6.8	4	100	0	54	25	22	0	51	1.48
326224--326274	26	2.0	26	88	0	75	35	9	19	35	1.85
333222--333337	25	4.6	25	75	7	81	26	16	26	30	1.97
333255--333321	26	2.6	25	79	4	71	32	14	22	29	1.94
333298--333357	26	2.3	26	82	0	75	21	21	28	28	1.99
334561--334601	19	2.2	19	95	0	73	26	0	31	41	1.56
336691--336717	10	2.7	10	100	0	54	22	11	7	59	1.56
336908--337011	20	5.2	20	79	6	95	36	15	34	13	1.87
336908--337011	40	2.6	39	78	6	111	36	15	34	13	1.87
342037--342088	20	2.5	21	84	3	61	26	19	19	34	1.95
348809--348896	20	4.5	20	76	13	94	39	18	31	10	1.84
348809--348896	38	2.3	39	88	4	124	39	18	31	10	1.84
349089--349113	2	12.5	2	100	0	50	48	0	0	52	1.00
349500--349528	12	2.4	12	100	0	58	55	10	0	34	1.34
351549--351586	17	2.3	17	86	4	51	50	0	7	42	1.31
354016--354143	14	8.9	14	65	15	55	42	1	3	52	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
354012--354154	58	2.5	58	80	7	168	44	1	2	51	1.24
354277--354316	21	1.9	21	89	0	62	30	20	0	50	1.49
354293--354335	16	2.7	16	85	0	59	30	30	0	39	1.57
354598--354622	13	1.9	13	100	0	50	32	0	4	64	1.12
364987--365020	15	2.3	15	94	0	59	14	5	32	47	1.69
371007--371038	3	11.3	3	87	12	50	68	0	0	31	0.90
371128--371203	39	2.0	38	92	2	125	39	17	9	34	1.81
397641--397860	30	7.4	30	80	9	200	35	3	25	35	1.74
397665--397740	27	2.7	28	84	10	93	30	6	31	31	1.83
397641--397911	30	9.2	29	76	10	174	36	3	23	35	1.73
397724--397919	59	3.3	59	84	4	207	36	2	22	38	1.68
402201--402509	43	7.2	43	81	4	374	26	28	20	24	1.99
405169--405210	19	2.2	19	87	8	59	33	0	2	64	1.07
405322--405541	41	5.4	41	88	1	316	17	30	21	30	1.96
405467--405540	24	3.4	24	63	24	63	13	31	25	29	1.94
405310--405541	81	2.9	82	86	1	333	17	30	21	31	1.96
405322--405578	41	6.3	40	85	4	277	17	30	22	29	1.97
405322--405578	122	2.1	122	84	5	324	17	30	22	29	1.97
407081--407113	16	2.1	16	94	0	57	42	18	3	36	1.66
409185--409220	18	1.9	18	88	5	54	55	8	5	30	1.52
412204--412239	2	18.0	2	100	0	72	50	0	0	50	1.00
412365--412389	11	2.3	11	100	0	50	60	8	8	24	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
417932--417967	2	18.0	2	94	0	63	50	47	0	2	1.15
418618--418686	34	2.0	34	100	0	138	43	23	8	24	1.82
421133--421177	14	3.1	15	73	20	51	51	26	6	15	1.68
423761--423882	29	4.2	29	84	0	181	19	15	13	50	1.77
423786--423825	21	1.9	21	85	10	55	25	20	10	45	1.81
423761--423902	29	4.9	29	82	0	149	20	15	12	51	1.76
423761--423902	58	2.4	58	85	0	167	20	15	12	51	1.76
424377--425210	45	18.6	45	85	4	1087	33	6	17	42	1.75
424377--425373	135	7.5	135	83	7	1238	33	5	17	42	1.74
425179--425239	29	2.1	29	90	0	95	36	1	18	44	1.59
425133--425284	74	2.1	74	93	0	259	34	4	17	43	1.70
425208--425373	45	3.7	45	92	0	260	34	4	17	43	1.68
425108--425328	119	1.9	119	95	0	397	33	5	18	43	1.72
425040--425373	164	2.0	166	88	2	492	33	5	17	44	1.71
425208--425394	45	4.2	45	88	0	248	35	6	16	41	1.75
425567--425637	36	2.0	36	85	0	97	36	5	15	42	1.71
432582--432625	22	2.0	21	83	12	54	72	4	0	22	1.02
432786--432812	14	1.9	14	100	0	54	3	7	7	81	0.97
434004--434032	13	2.2	13	100	0	58	17	13	20	48	1.81
443722--444624	99	9.2	98	79	4	807	20	28	15	35	1.93
443918--444578	50	13.4	50	69	9	268	21	29	14	34	1.93
443703--444629	197	4.7	198	81	3	985	20	27	15	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
443879--444624	296	2.5	297	83	3	923	20	28	14	35	1.93
445643--445685	14	3.0	15	76	10	54	2	13	2	81	0.89
445643--445685	22	2.0	22	86	9	61	2	13	2	81	0.89
451953--451992	20	2.0	20	90	4	64	0	17	10	72	1.11
456629--456653	10	2.5	10	100	0	50	36	0	0	64	0.94
458544--458578	14	2.4	15	90	4	54	17	2	22	57	1.53
468014--468049	16	2.1	16	90	10	54	55	0	13	30	1.39
468594--468826	52	4.5	52	90	2	371	25	15	24	34	1.95
468742--468823	26	3.2	26	64	19	71	24	15	28	31	1.96
468594--468826	103	2.2	104	89	2	371	25	15	24	34	1.95
472890--472922	16	2.1	16	94	0	57	54	3	18	24	1.57
473909--474199	52	5.6	52	91	0	474	25	14	24	36	1.93
476938--476989	18	3.1	17	77	5	52	34	0	1	63	1.06
480294--480331	19	2.0	19	89	0	58	52	18	2	26	1.58
480537--480581	22	2.0	22	100	0	90	33	8	0	57	1.30
481169--481272	52	2.0	52	100	0	208	19	23	23	34	1.96
488964--489011	24	2.0	24	95	0	87	45	10	20	22	1.81
493909--495270	681	2.0	681	96	0	2499	33	15	22	28	1.95
504938--504988	18	2.9	17	86	11	68	56	7	5	29	1.51
510919--510976	25	2.3	25	84	3	71	32	27	13	25	1.94
510935--511018	25	3.4	25	81	6	107	36	16	16	29	1.91
528775--529186	132	3.1	133	90	2	634	21	23	24	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
531886--531924	7	5.9	7	88	11	64	0	25	0	74	0.82
531880--531923	6	7.2	6	85	10	54	0	22	0	77	0.77
531880--531921	13	3.3	13	87	12	61	0	21	0	78	0.75
531881--531936	26	2.2	26	80	6	60	7	21	0	71	1.09
540564--540601	20	1.9	20	84	10	51	47	7	7	36	1.62
547443--547682	118	2.0	118	96	0	444	36	19	18	25	1.94
549256--549307	21	2.5	21	96	0	95	26	23	17	32	1.96
550408--550450	22	2.0	22	81	9	52	39	4	9	46	1.57
552497--552680	40	4.6	40	87	0	242	23	27	22	26	2.00
571530--571762	56	4.2	56	81	4	283	24	21	20	33	1.97
571530--571762	111	2.1	112	85	5	312	24	21	20	33	1.97
571543--571788	28	8.8	28	70	10	146	24	21	21	32	1.98
571543--571788	56	4.4	56	82	2	280	24	21	21	32	1.98
571557--571788	111	2.1	112	82	4	281	25	21	20	33	1.97
571781--571896	28	4.1	28	80	0	124	28	12	24	35	1.91
571776--571899	56	2.2	56	86	2	169	28	12	24	35	1.91
571808--571940	28	4.8	28	76	5	135	27	14	24	33	1.94
574831--574884	21	2.6	21	79	5	65	31	12	27	27	1.93
585729--585796	24	2.7	26	80	8	79	41	33	11	13	1.81
585898--585935	13	2.8	13	88	4	58	23	21	13	42	1.88
587887--588123	118	2.0	118	100	0	474	31	17	14	36	1.90
589743--589787	14	3.1	14	84	9	54	22	6	2	68	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
593168--593206	20	2.0	20	89	0	60	71	0	0	28	0.86
596357--596421	28	2.3	28	100	0	130	47	7	13	30	1.71
602348--602388	16	2.5	17	88	4	57	60	0	2	36	1.10
602359--602424	24	2.8	24	81	2	71	48	0	0	51	1.00
602929--602961	17	1.9	17	88	11	50	63	0	0	36	0.95
603186--603233	23	2.1	23	88	0	69	54	0	4	41	1.20
603283--603307	2	12.5	2	100	0	50	52	0	0	48	1.00
615011--615062	22	2.5	21	84	6	61	26	3	5	63	1.34
615024--615062	20	1.9	21	89	5	62	25	5	5	64	1.35
617954--618117	80	2.0	80	95	0	292	40	20	14	25	1.90

Tables:   1   2   3