genome.fa.s14446.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014446.1 Kokia drynarioides strain JFW-HI SEQ_129485, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  684930

Tables:   1   2   3   

This is table  3  of  3  ( 286 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
630089--630149	30	2.0	30	83	0	77	39	18	4	37	1.72
632096--632137	21	2.0	21	81	9	50	52	7	2	38	1.42
632958--632997	16	2.4	18	84	12	50	65	2	2	30	1.19
632977--633016	20	2.0	21	90	5	64	67	0	0	32	0.91
633016--633075	26	2.4	25	77	2	66	61	0	3	35	1.12
632968--633154	9	20.6	9	65	15	64	63	1	2	33	1.16
633103--633163	28	2.2	28	82	11	72	62	0	3	34	1.12
633392--633425	17	2.0	17	88	0	50	20	2	8	67	1.31
633531--633579	22	2.2	23	81	7	64	42	6	0	51	1.27
633922--633970	21	2.5	19	77	9	62	55	0	0	44	0.99
635208--635314	53	2.0	53	85	5	146	28	21	9	40	1.84
635404--635498	49	1.9	49	89	4	147	28	24	7	40	1.82
640216--640261	22	2.0	22	83	8	56	30	21	13	34	1.91
640253--640344	23	4.0	23	77	11	98	32	16	18	32	1.93
640276--640365	47	1.9	46	84	2	117	30	18	17	33	1.95
642827--642855	2	14.5	2	100	0	58	48	0	0	51	1.00
643196--643248	12	4.4	12	81	6	54	73	5	18	1	1.12
644214--644380	30	5.6	30	73	9	101	34	20	7	38	1.80
644305--644368	29	2.2	29	86	5	85	35	21	4	37	1.75
644233--644380	59	2.5	59	74	5	147	33	22	6	37	1.80
645711--645743	10	3.4	10	91	4	50	84	0	6	9	0.76
645707--645760	14	3.8	13	80	14	54	81	0	9	9	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
646071--646290	112	1.9	115	86	2	311	31	18	10	39	1.85
646685--647308	49	12.7	49	72	5	418	35	16	27	20	1.94
646684--647311	98	6.4	97	84	1	734	35	16	27	21	1.94
647678--647859	45	4.0	46	82	2	215	32	23	18	25	1.97
649273--649420	30	4.9	30	80	9	133	33	21	7	37	1.81
649273--649420	60	2.5	60	80	8	160	33	21	7	37	1.81
649325--649530	30	6.9	30	75	6	159	34	19	6	39	1.77
651344--651597	136	1.9	134	85	3	348	23	12	11	53	1.70
654780--654860	40	2.0	40	100	0	162	17	17	25	39	1.91
661818--661861	20	2.2	20	84	8	54	4	9	22	63	1.42
661858--661897	12	3.3	12	82	0	53	2	5	22	70	1.19
661852--661897	24	1.9	24	81	0	56	4	6	19	69	1.28
661865--661911	15	2.9	16	76	20	53	8	4	19	68	1.33
661840--661911	35	2.2	32	85	7	90	6	5	20	66	1.36
664142--664189	20	2.2	21	78	17	53	68	4	4	22	1.24
664431--664479	20	2.4	21	77	16	57	67	6	0	26	1.14
664616--664643	12	2.3	12	100	0	56	85	0	14	0	0.59
665988--666246	76	3.4	76	80	4	288	28	22	20	29	1.98
673766--674090	61	5.3	61	82	3	370	33	21	12	33	1.90
673766--674090	122	2.7	121	83	5	411	33	21	12	33	1.90
678374--678749	50	7.4	49	67	15	167	44	1	8	44	1.44
678419--678465	20	2.3	20	85	3	58	44	0	4	51	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
678296--678886	150	3.9	152	89	4	881	44	2	9	43	1.51
679358--679518	81	2.0	81	96	0	295	40	16	13	29	1.86

Tables:   1   2   3

The End!