genome.fa.s14628.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014628.1 Kokia drynarioides strain JFW-HI SEQ_129667, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  761112

Tables:   1   2   3   

This is table  2  of  3  ( 313 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
271345--271394	21	2.2	24	86	10	70	44	6	30	20	1.75
271601--271634	16	2.1	16	89	10	52	55	0	0	44	0.99
272821--273125	29	10.4	30	78	6	232	35	26	2	36	1.69
272837--273128	30	9.9	29	78	9	227	36	25	1	36	1.67
272842--273128	59	4.9	60	73	9	200	36	25	1	36	1.67
279022--279079	4	14.5	4	81	0	53	46	5	27	20	1.72
282368--282838	237	2.0	237	95	0	843	40	15	7	36	1.75
284220--284435	56	3.9	55	84	6	256	33	16	23	26	1.96
284248--284442	28	6.9	28	67	8	108	33	17	23	26	1.96
284459--284562	28	3.7	28	85	2	129	23	14	24	38	1.92
285469--285705	117	2.0	117	100	0	474	30	18	20	29	1.97
287144--287229	27	3.2	27	100	0	172	27	6	15	50	1.69
287552--287630	33	2.4	34	91	2	124	37	15	22	24	1.92
293836--293869	6	5.8	6	86	6	52	82	2	0	14	0.79
293855--293916	19	3.3	19	82	10	74	61	1	1	35	1.16
293854--293918	20	3.4	19	80	14	71	60	1	1	36	1.16
294800--294991	99	2.0	97	90	2	303	38	15	16	30	1.89
295258--295584	29	11.2	30	76	11	177	34	5	26	33	1.79
295294--295507	29	7.4	29	83	3	225	33	6	28	31	1.83
295263--295519	58	4.4	57	76	9	207	33	6	28	32	1.82
295470--295585	30	3.8	30	80	5	128	38	3	22	35	1.71
297380--297481	11	9.0	11	68	17	66	57	3	0	37	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
297381--297483	17	6.1	17	88	0	152	58	3	0	36	1.23
297373--297488	6	19.8	6	71	11	80	56	4	0	37	1.25
297891--298724	39	21.4	38	69	12	388	25	18	30	24	1.98
297867--298101	78	3.0	76	83	6	272	26	18	29	25	1.98
298074--298531	78	5.9	78	80	5	453	25	19	29	24	1.99
297891--298296	197	2.1	196	86	2	564	24	19	30	25	1.98
298034--298646	117	5.2	117	75	9	466	24	19	30	25	1.98
298074--298530	155	2.9	155	80	6	451	26	19	29	24	1.99
298068--298568	233	2.1	233	82	3	623	25	19	30	24	1.98
298162--298649	117	4.2	117	75	5	475	25	18	31	24	1.97
301027--301053	3	9.0	3	100	0	54	0	33	0	66	0.92
308914--308990	30	2.6	28	82	11	84	32	0	27	40	1.57
311190--311224	17	2.1	17	100	0	70	57	0	0	42	0.99
311183--311231	24	2.0	24	92	7	82	55	2	0	42	1.11
311182--311229	6	7.8	6	84	11	62	54	2	0	43	1.12
321633--321684	26	2.0	26	100	0	104	53	11	11	23	1.69
322205--322237	16	2.0	17	88	5	50	75	6	3	15	1.11
324806--324898	45	2.1	45	97	0	177	41	8	16	33	1.78
324970--325002	8	4.2	8	88	7	50	63	0	0	36	0.95
324974--325009	14	2.5	15	86	9	56	63	0	0	36	0.94
325965--326035	35	2.0	35	91	0	115	26	18	12	42	1.86
326066--326124	29	2.0	29	93	0	100	33	35	10	20	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
329767--329854	25	3.4	25	78	6	95	39	21	15	22	1.91
329781--329935	52	3.0	52	80	3	152	39	22	12	25	1.90
329767--329887	25	4.6	25	76	7	89	40	20	14	24	1.89
329792--329941	25	5.8	27	74	7	96	39	21	13	26	1.90
331696--331788	25	3.7	25	85	1	114	20	19	24	35	1.96
350230--350271	18	2.3	19	84	8	52	23	4	4	66	1.30
352259--352311	18	2.8	19	81	10	65	33	0	11	54	1.36
361331--361372	11	3.7	11	79	14	50	35	0	2	61	1.09
366748--366784	18	2.1	18	100	0	74	62	16	10	10	1.55
366811--366856	22	2.1	22	95	0	83	30	23	19	26	1.98
366811--366868	22	2.7	22	89	2	73	31	29	15	24	1.95
371834--371860	14	1.9	14	100	0	54	18	22	29	29	1.97
382525--382571	19	2.5	19	82	0	67	51	8	17	23	1.72
384366--384452	38	2.3	38	97	0	165	37	28	8	25	1.84
387039--387077	18	2.2	18	85	0	51	43	20	15	20	1.88
393742--393784	17	2.5	17	88	0	59	18	9	13	58	1.62
396885--397291	158	2.6	157	85	4	532	21	20	25	31	1.98
403241--403702	157	2.9	158	85	4	574	22	24	24	29	1.99
419191--419439	53	4.7	53	85	2	322	28	16	21	33	1.95
426368--426563	53	3.7	53	86	0	286	27	15	22	35	1.94
428438--428620	52	3.5	52	87	3	262	35	24	14	25	1.94
434843--434895	21	2.5	23	73	17	60	33	24	11	30	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
435625--435755	52	2.5	52	92	0	208	33	25	16	25	1.95
436847--436952	53	2.0	53	92	0	176	37	18	11	32	1.87
446842--446881	17	2.4	17	82	0	53	47	12	17	22	1.81
474612--474647	18	2.0	18	94	0	63	47	5	19	27	1.72
476874--476910	14	2.6	15	83	8	51	0	21	0	78	0.75
477471--477523	17	3.1	16	81	10	52	47	13	20	18	1.82
481525--481728	98	2.1	99	97	0	383	27	25	17	28	1.98
489228--489275	5	9.8	5	86	4	62	20	4	2	72	1.11
489227--489275	14	3.4	14	88	8	71	22	4	2	71	1.13
492079--492130	21	2.5	22	81	15	65	32	17	17	32	1.93
501790--501887	38	2.6	38	71	7	101	30	11	22	35	1.89
510187--510279	31	3.0	31	100	0	186	45	9	9	35	1.70
519526--519564	14	2.8	15	88	11	57	23	28	17	30	1.97
522445--522542	38	2.6	38	80	7	128	29	16	25	28	1.97
522564--522634	37	1.9	37	88	0	106	26	16	29	26	1.97
526732--526830	24	4.1	24	89	0	144	29	23	19	28	1.98
526732--526830	48	2.1	48	92	3	164	29	23	19	28	1.98
528364--528606	52	4.7	52	88	2	353	27	16	23	32	1.95
528388--528469	26	3.2	26	61	19	62	26	13	24	35	1.92
528364--528621	104	2.5	104	87	1	392	28	15	22	33	1.95
529004--529063	30	2.0	30	96	0	111	38	16	13	31	1.87
531725--531774	21	2.4	21	86	0	64	36	22	12	30	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
537012--537368	195	1.8	191	84	3	482	25	26	19	28	1.99
547773--547823	24	2.1	24	82	7	59	49	7	23	19	1.74
552442--552590	69	2.1	70	87	1	210	40	15	16	27	1.89
552815--552862	14	3.4	14	85	0	69	43	2	4	50	1.33
552852--552895	22	2.0	22	90	0	70	36	6	2	54	1.40
552939--552986	14	3.4	14	79	0	60	45	4	4	45	1.41
554988--555152	72	2.3	71	77	7	172	31	24	16	27	1.97
556207--556251	18	2.5	18	82	7	56	26	26	17	28	1.98
562491--562570	15	5.3	15	72	11	65	27	22	26	23	2.00
562478--562573	45	2.1	45	82	3	113	27	23	27	21	1.99
564192--564236	20	2.3	19	85	11	56	31	8	15	44	1.77
565368--565419	22	2.4	23	81	12	65	32	11	0	55	1.36
565368--565421	20	2.6	21	85	11	67	31	12	0	55	1.38
565881--565925	18	2.6	18	74	19	51	37	0	6	55	1.26
571768--571831	31	2.1	29	85	5	83	43	0	20	35	1.52
572874--572944	29	2.3	29	85	7	88	46	0	2	50	1.16
573094--573125	11	2.9	11	90	0	55	34	0	9	56	1.32
574075--574162	40	2.2	40	85	4	115	37	5	10	46	1.62
575075--575114	18	2.3	18	82	4	55	27	10	17	45	1.80
579305--579335	7	4.4	7	91	0	53	32	22	0	45	1.53
587373--587421	20	2.3	22	79	10	57	26	4	0	69	1.06
588895--588963	34	2.0	34	100	0	138	44	11	17	26	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
595924--595976	26	2.1	25	92	3	88	45	26	0	28	1.54
613099--613158	21	2.9	21	73	9	68	36	25	15	23	1.93
613844--613960	60	2.0	60	82	3	146	32	22	14	30	1.94
613909--614199	52	5.6	52	89	0	411	35	23	14	26	1.93
619924--619973	12	4.2	12	80	10	57	2	34	0	64	1.05
621369--621417	24	2.0	26	92	8	84	18	4	40	36	1.70
629202--629244	3	15.3	3	81	13	56	0	30	0	69	0.88
629202--629246	18	2.5	18	89	7	65	0	28	0	71	0.87
629204--629244	10	3.7	11	87	9	57	0	29	0	70	0.87
637003--637051	23	2.1	24	85	11	66	51	10	14	24	1.73

Tables:   1   2   3