genome.fa.s14628.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014628.1 Kokia drynarioides strain JFW-HI SEQ_129667, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  761112

Tables:   1   2   3   

This is table  3  of  3  ( 313 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
640636--640692	21	2.7	21	83	0	69	35	24	17	22	1.95
641440--641668	52	4.4	52	88	0	332	35	24	13	26	1.92
644774--644922	29	5.4	26	71	17	95	27	17	25	29	1.97
644765--644921	55	2.8	55	83	1	179	27	18	25	28	1.98
644784--644921	28	4.9	28	72	16	99	27	18	26	28	1.98
645850--645902	25	2.1	25	89	0	79	18	18	26	35	1.95
650463--650500	6	6.3	6	100	0	76	34	0	15	50	1.45
650499--650536	6	6.3	6	100	0	76	50	31	0	18	1.47
652511--652540	5	6.0	5	92	0	51	0	23	0	76	0.78
659487--659916	213	2.0	213	98	0	826	43	11	12	31	1.78
660551--660765	62	3.5	61	73	17	201	24	18	18	38	1.93
660597--660696	31	3.2	33	79	11	111	24	20	21	35	1.96
660508--660782	124	2.2	124	88	2	410	24	20	17	36	1.94
660604--660782	31	5.7	30	65	16	78	25	19	18	36	1.94
661556--661598	4	10.5	4	82	12	52	0	25	4	69	1.07
662546--662598	6	8.0	6	80	19	61	77	0	20	1	0.87
662547--662599	7	7.7	7	81	8	56	79	0	18	1	0.83
662548--662598	13	3.8	13	85	14	68	78	0	19	1	0.85
662546--662599	21	2.7	20	83	11	74	77	0	20	1	0.86
662546--662599	14	4.0	13	77	17	65	77	0	20	1	0.86
664053--664214	40	4.1	40	90	0	252	23	18	26	31	1.97
667345--667391	22	2.1	22	84	11	60	68	0	4	27	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
667350--667438	10	9.2	9	68	17	54	62	1	4	31	1.22
667378--667455	28	2.9	26	81	11	70	64	1	5	29	1.23
670079--670114	14	2.6	14	90	0	54	38	2	25	33	1.70
674008--674277	43	6.0	48	77	16	164	30	25	20	23	1.98
674101--674364	43	6.1	43	84	2	298	29	23	18	27	1.98
675738--675778	19	2.1	20	86	4	57	53	0	2	43	1.13
676584--676933	41	8.6	41	77	5	325	25	24	23	26	2.00
676584--676933	82	4.3	82	81	2	366	25	24	23	26	2.00
676584--676933	122	2.9	120	82	5	389	25	24	23	26	2.00
676987--677095	40	2.7	40	86	0	155	18	24	20	36	1.94
687880--687919	19	2.2	18	86	8	55	52	0	12	35	1.39
688414--688491	29	2.6	30	88	6	106	52	0	0	47	1.00
693782--693892	50	2.2	50	81	9	145	20	25	18	35	1.96
694651--694787	36	3.8	36	88	0	193	35	16	24	23	1.94
695456--695529	21	3.5	21	81	7	69	33	13	20	32	1.91
700306--700347	18	2.3	18	95	0	75	11	38	4	45	1.62
702373--702524	81	1.9	81	98	0	295	35	14	20	29	1.92
704219--704293	38	2.0	38	84	5	98	29	24	9	37	1.86
713915--714050	36	3.8	35	86	7	177	36	14	25	23	1.93
713915--714050	72	1.9	72	87	6	204	36	14	25	23	1.93
714746--714786	21	2.0	21	90	9	66	34	17	14	34	1.90
715063--715374	101	3.1	101	78	2	349	26	19	17	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
715115--715335	50	4.4	50	70	11	139	25	19	18	37	1.94
718489--718770	156	1.8	151	89	3	438	35	14	13	36	1.86
719072--719138	32	2.1	32	94	0	116	25	17	14	41	1.88
719691--719844	67	2.3	67	82	10	192	62	11	16	9	1.54
719826--719850	5	5.0	5	100	0	50	80	0	20	0	0.72
721104--721166	6	10.7	6	80	10	58	77	1	17	3	0.97
721975--722174	100	2.0	100	82	5	242	37	17	17	28	1.92
722220--722378	50	3.1	51	74	8	153	43	17	13	25	1.85
722434--723200	102	7.5	102	79	5	617	35	19	18	25	1.95
722434--723159	204	3.6	202	79	6	684	35	19	18	26	1.95
722862--723250	204	1.9	204	81	6	466	40	19	14	25	1.90
727124--727174	20	2.5	20	83	3	57	50	39	3	5	1.45
728426--728455	13	2.2	13	94	5	51	0	13	0	86	0.57
728494--728554	28	2.1	30	84	6	81	14	6	6	72	1.26
728684--728725	21	2.0	21	82	17	52	21	4	2	71	1.16
728726--728772	22	2.1	22	84	7	60	27	4	8	59	1.45
729589--729650	32	1.9	32	100	0	124	40	19	9	30	1.84
730786--730860	23	3.3	21	72	21	71	68	5	6	20	1.33
730787--730867	24	3.4	24	72	13	85	67	4	6	20	1.31
730792--730860	15	4.4	15	72	22	61	68	4	7	20	1.32
731258--731292	11	3.2	11	87	0	52	71	5	8	14	1.29
735762--735823	29	2.1	30	84	3	81	37	4	0	58	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
742474--742511	2	19.0	2	100	0	76	50	0	50	0	1.00
744662--744767	52	2.0	52	100	0	212	20	32	16	30	1.95
747618--747643	2	13.0	2	100	0	52	50	0	50	0	1.00
758406--758460	26	2.1	26	82	0	65	29	23	18	29	1.98
758476--758557	38	2.2	38	82	6	105	31	10	25	31	1.90
760755--760792	14	2.7	15	88	8	53	0	18	0	81	0.69
760755--760792	15	2.5	15	84	12	51	0	18	0	81	0.69

Tables:   1   2   3

The End!