genome.fa.s14835.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014835.1 Kokia drynarioides strain JFW-HI SEQ_129877, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  538739

Tables:   1   2   

This is table  2  of  2  ( 216 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
374237--374462	48	4.7	48	89	2	303	53	13	7	24	1.67
376183--377858	215	7.9	216	82	5	1919	28	17	14	40	1.88
376201--377858	431	3.9	429	82	5	2006	28	17	14	39	1.88
377995--378027	17	1.9	17	88	11	50	27	0	6	66	1.15
379626--379679	19	2.8	19	74	20	58	70	3	14	11	1.29
382351--382484	50	2.7	50	81	6	139	35	15	11	36	1.85
383723--383801	26	2.9	25	76	18	77	64	3	12	18	1.42
383755--383813	26	2.3	26	79	5	66	74	3	11	10	1.18
384743--384836	32	3.1	32	83	8	117	62	3	12	21	1.43
384732--384797	18	4.0	17	70	18	59	63	1	15	19	1.38
386407--386471	33	1.9	34	87	3	96	29	13	10	46	1.77
388012--388109	52	1.9	52	83	8	130	32	17	12	37	1.87
388749--389371	214	2.9	214	79	3	653	28	17	12	41	1.87
389229--389540	169	1.8	169	86	2	457	27	18	12	41	1.87
388791--389925	599	1.9	596	85	3	1553	27	17	12	41	1.86
389386--390605	214	5.7	215	80	4	1302	28	17	13	40	1.87
389389--390544	429	2.7	424	81	4	1329	28	17	12	40	1.87
391552--391614	32	2.0	32	90	0	99	38	17	11	33	1.85
391662--391758	39	2.5	39	94	0	176	54	14	5	25	1.60
392197--392229	6	5.5	6	100	0	66	51	48	0	0	1.00
394848--394900	13	3.7	14	80	10	54	3	26	1	67	1.17
394909--394964	24	2.2	26	84	6	80	12	17	0	69	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
394917--394995	25	3.2	24	81	15	81	10	16	0	73	1.09
394916--394996	24	3.3	25	80	16	80	9	18	0	71	1.13
394916--394994	26	3.0	26	76	10	72	10	17	0	72	1.12
397039--397085	25	2.0	24	83	8	60	27	10	2	59	1.42
398144--398222	32	2.5	32	93	0	131	37	18	11	31	1.87
398689--404772	215	28.7	212	72	12	1250	28	17	13	41	1.86
399339--404833	216	25.9	216	73	11	3605	28	17	13	41	1.87
403053--404833	215	8.3	212	78	7	1624	29	16	13	40	1.86
410494--410598	52	2.0	52	100	0	210	34	15	7	42	1.75
410592--410633	22	2.0	22	86	13	61	26	14	2	57	1.50
411681--411743	32	2.0	32	87	0	90	41	19	7	31	1.80
411789--411887	39	2.5	39	96	0	180	54	15	5	25	1.61
412252--412854	211	2.8	208	79	5	615	28	15	12	42	1.84
412251--415869	216	17.2	210	74	10	1941	28	17	13	40	1.87
412921--415136	216	10.3	216	81	3	2316	28	18	12	40	1.87
412921--415869	431	6.9	429	79	7	2687	28	17	13	40	1.87
415942--417020	215	5.0	216	80	6	1016	27	17	13	40	1.88
415942--420350	213	21.0	215	71	12	2126	28	17	13	40	1.88
417019--420336	429	7.9	429	75	10	2442	28	17	13	40	1.88
418641--419015	200	1.9	201	83	5	490	26	16	15	41	1.88
420994--421043	25	2.1	23	82	14	57	54	12	12	22	1.69
426344--428766	215	11.4	213	74	11	1599	28	18	13	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
426469--431874	615	8.7	618	72	14	2611	28	17	13	40	1.87
427651--428766	216	5.2	214	78	6	972	28	18	12	39	1.88
429269--431812	216	12.1	214	72	12	1302	28	17	13	40	1.87
429267--429928	215	3.1	213	81	3	738	29	17	13	39	1.88
430986--431827	430	2.0	431	83	4	1067	26	16	14	41	1.87
431711--432029	156	2.0	155	82	4	383	23	19	15	41	1.90
432901--433011	55	2.0	55	100	0	222	26	12	28	32	1.93
433221--433283	32	2.0	32	90	0	99	41	17	11	30	1.84
434146--435050	217	4.2	215	79	4	880	28	18	13	40	1.88
434146--436347	430	5.2	427	73	11	1573	28	17	12	40	1.87
434862--435241	194	2.0	194	83	5	482	28	19	11	40	1.87
434407--436141	625	2.8	610	80	6	1832	28	17	13	40	1.87
435054--435525	216	2.2	217	82	3	560	28	17	13	40	1.88
435423--435800	187	2.0	184	81	5	438	27	18	13	40	1.88
435609--436401	213	3.7	213	77	8	699	29	17	12	40	1.86
437944--439148	216	5.6	216	82	4	1237	27	17	13	41	1.87
437945--439112	431	2.7	429	80	5	1222	26	17	13	41	1.87
440648--440698	19	2.8	18	75	16	52	76	0	7	15	1.00
450689--450730	18	2.3	19	88	8	61	71	0	19	9	1.13
450708--450760	20	2.5	20	81	9	61	73	0	20	5	1.03
450728--450792	31	2.2	29	79	12	80	69	0	26	4	1.08
455849--457361	783	1.9	779	92	2	2507	26	22	14	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
459676--459772	37	2.6	38	91	3	151	23	4	15	56	1.56
461333--462509	216	5.5	215	81	6	1223	28	18	12	40	1.87
461333--462509	432	2.7	429	83	4	1412	28	18	12	40	1.87
464427--464568	74	1.9	74	91	0	230	32	14	14	38	1.86
466396--466516	50	2.4	50	81	4	127	37	11	14	36	1.83
468745--468791	20	2.4	19	86	6	67	74	4	10	10	1.20
469967--470036	37	1.9	36	87	0	95	45	18	5	30	1.72
470731--470855	49	2.6	49	92	0	196	29	17	20	32	1.96
475151--475312	80	2.0	81	85	6	220	35	21	14	28	1.93
476445--476491	25	1.9	24	87	12	69	57	12	10	19	1.64
477121--477156	15	2.4	15	90	0	54	0	33	0	66	0.92
485684--485752	26	2.7	26	75	6	77	28	24	21	24	1.99
487064--487140	38	2.0	38	97	0	145	44	18	7	29	1.78
489543--489581	19	2.0	20	90	5	62	7	12	5	74	1.20
495144--495246	51	2.0	51	96	0	188	33	11	27	28	1.91
501168--501206	19	2.1	19	90	9	62	12	2	20	64	1.40
501294--501380	4	22.2	4	86	9	81	65	0	34	0	0.93
501329--501366	7	5.3	7	93	6	67	57	0	42	0	0.98
501329--501375	11	4.2	11	84	13	60	57	0	42	0	0.98
503751--503886	45	3.0	45	93	0	227	19	19	27	34	1.95
505783--505830	16	3.2	16	72	22	59	33	0	8	58	1.28
506586--506628	21	2.1	20	91	4	68	58	13	0	27	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
507674--507721	19	2.6	18	81	15	53	54	4	2	39	1.32
512125--512488	196	1.8	201	84	6	510	49	24	9	15	1.75
513254--513310	30	1.9	30	86	13	82	45	0	1	52	1.11
513274--513380	21	4.8	24	70	20	65	48	0	0	49	1.13
513262--513383	33	3.6	33	75	22	94	47	0	1	50	1.16
528157--528241	42	2.0	42	97	0	161	25	15	11	47	1.79
532971--533016	18	2.6	18	83	13	67	71	4	10	13	1.27
536251--536296	18	2.6	18	83	13	67	71	4	10	13	1.27

Tables:   1   2

The End!