genome.fa.s15053.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015053.1 Kokia drynarioides strain JFW-HI SEQ_130097, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  444518

Tables:   1   2   

This is table  2  of  2  ( 228 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
245492--245720	98	2.3	98	86	3	309	39	19	26	14	1.90
245492--245765	98	2.8	98	84	4	284	41	19	24	14	1.89
246186--246245	17	3.8	16	72	14	52	41	0	3	55	1.16
246182--246269	16	5.3	17	75	14	85	44	0	2	53	1.13
246271--246301	14	2.2	14	94	0	53	58	19	3	19	1.53
246933--247018	42	2.1	42	93	4	149	51	0	11	37	1.39
247000--247034	3	11.3	3	87	6	52	62	0	0	37	0.95
246958--247092	60	2.4	57	83	10	161	55	0	6	37	1.31
247024--247058	13	2.7	13	90	0	52	57	2	8	31	1.44
248254--248680	29	14.7	29	66	14	179	32	26	4	36	1.77
248254--248762	59	8.7	58	80	6	523	31	25	4	37	1.77
248254--248761	117	4.4	116	85	6	620	31	25	4	37	1.77
248248--248762	29	17.7	28	66	19	154	31	25	4	38	1.76
248746--248819	28	2.6	28	79	10	78	31	27	8	33	1.86
251210--251284	24	3.4	23	79	12	70	36	22	10	30	1.88
251892--252210	94	3.4	94	83	1	392	30	22	17	28	1.97
252608--252660	27	2.0	27	82	10	65	37	5	5	50	1.50
257073--257124	24	2.2	24	100	0	104	57	0	0	42	0.98
258739--258779	19	2.2	18	87	12	57	43	4	4	46	1.46
259043--259109	31	2.2	31	97	2	127	40	8	2	47	1.50
259921--260238	170	1.9	171	84	3	426	27	22	16	32	1.96
259827--260238	85	4.8	86	75	5	354	28	23	17	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
259827--260258	43	10.1	43	75	4	302	28	23	17	30	1.97
269282--269443	42	3.9	42	75	6	141	17	22	14	44	1.86
269363--269475	42	2.7	42	83	1	127	20	22	11	46	1.82
271063--271098	18	2.1	18	89	5	56	36	13	5	44	1.68
277052--277284	78	3.0	78	78	3	252	35	12	8	43	1.74
277938--278005	32	2.1	32	100	0	136	45	14	5	33	1.69
280337--280379	21	2.0	21	95	0	77	37	0	13	48	1.43
280341--280396	21	2.7	21	82	0	67	35	7	8	48	1.62
283115--283153	16	2.4	16	91	0	60	46	0	2	51	1.14
283570--283627	27	2.3	25	80	13	66	41	10	10	37	1.73
283847--283884	17	2.2	17	86	9	51	63	5	0	31	1.17
284941--285185	29	8.6	28	73	10	176	34	26	3	35	1.73
284938--285182	114	2.2	113	85	7	318	34	26	3	35	1.73
284942--285252	85	3.6	86	78	9	289	34	25	3	36	1.72
285162--285233	30	2.4	30	77	6	76	38	18	1	41	1.59
295466--295559	49	1.9	49	100	0	188	45	14	25	13	1.82
296492--297056	39	14.6	39	70	11	302	24	29	20	25	1.99
296484--297043	78	7.2	78	83	1	633	24	29	19	25	1.98
296484--297043	155	3.6	154	83	3	635	24	29	19	25	1.98
297471--297508	16	2.3	17	90	4	60	42	2	2	52	1.29
298201--298233	14	2.4	14	94	0	57	60	3	0	36	1.12
299286--299506	30	7.6	30	74	11	183	34	22	3	38	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
299284--299505	29	7.7	29	73	14	138	34	22	3	39	1.72
299287--299446	59	2.8	56	80	8	178	34	21	3	40	1.69
299397--299543	29	5.1	28	71	15	104	36	25	2	36	1.68
299642--299694	14	3.6	15	77	10	56	22	11	5	60	1.52
300646--300696	24	2.1	24	88	0	75	17	1	25	54	1.53
301183--301725	272	2.0	272	97	0	1016	33	9	20	36	1.85
302651--302708	21	2.8	21	89	0	80	32	25	12	29	1.92
303388--303463	37	2.1	37	92	0	125	28	27	15	27	1.96
303388--303451	19	3.4	19	72	12	69	29	25	15	29	1.96
303402--303468	18	3.7	18	78	4	62	29	26	17	25	1.98
311669--311710	21	2.0	22	85	4	59	64	4	19	11	1.44
313497--313536	17	2.4	17	87	8	55	17	5	0	77	0.94
313496--313536	12	3.5	12	78	15	50	17	4	0	78	0.93
321918--321999	30	2.9	27	82	13	87	30	1	9	58	1.38
321918--321999	28	3.0	27	79	12	78	30	1	9	58	1.38
323526--323574	21	2.3	22	78	3	55	26	2	2	69	1.10
328835--329126	52	5.6	52	83	6	360	26	13	22	38	1.91
328832--329131	105	2.9	104	83	6	376	27	12	22	37	1.90
336370--336399	2	15.5	2	93	6	53	46	0	0	53	1.00
337630--337654	3	8.3	3	100	0	50	32	0	0	68	0.90
337813--337841	2	14.5	2	100	0	58	51	0	0	48	1.00
338549--338576	4	7.0	4	100	0	56	0	50	25	25	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
338616--338644	3	9.7	3	100	0	58	31	34	34	0	1.58
345664--345689	5	5.2	5	100	0	52	0	61	0	38	0.96
346320--346360	21	1.9	22	90	5	66	41	0	0	58	0.98
346317--346365	21	2.3	20	80	10	62	44	0	0	55	0.99
349963--350103	30	4.7	31	72	8	105	34	6	22	36	1.80
352054--352196	46	3.1	46	85	4	146	31	17	19	31	1.95
352069--352200	46	2.9	46	86	0	156	31	18	18	31	1.95
352272--353010	243	3.1	229	81	8	759	23	20	18	38	1.94
352393--353016	115	5.3	115	81	5	732	23	19	18	38	1.93
364863--364932	30	2.3	30	85	2	86	32	7	22	37	1.82
364890--365044	30	5.2	30	76	10	120	34	9	22	34	1.86
364890--365035	60	2.4	60	84	5	179	33	8	23	34	1.85
366217--366269	16	3.4	16	78	2	54	18	3	33	43	1.68
366234--366265	16	1.9	16	93	6	55	12	3	37	46	1.57
373775--373815	19	2.3	17	87	8	55	24	4	0	70	1.06
384260--384300	22	1.9	22	90	5	66	34	0	0	65	0.93
384382--384421	19	2.1	19	100	0	80	30	35	0	35	1.58
385908--385947	20	2.0	20	100	0	80	55	25	5	15	1.60
386650--386895	10	22.0	10	69	20	109	39	19	3	37	1.70
386604--386831	68	3.1	77	78	13	269	40	21	3	34	1.72
386659--386887	68	3.5	68	87	8	352	38	20	3	36	1.71
386737--386887	59	2.6	59	92	2	243	38	20	3	37	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
392623--392729	33	3.5	31	69	22	91	37	21	5	35	1.77
392567--392765	59	3.4	58	86	2	256	39	21	5	34	1.75
392728--392768	10	4.0	10	83	3	55	36	19	2	41	1.65
392729--392770	20	2.0	21	90	4	68	33	19	4	42	1.72
407259--407321	19	3.3	19	85	12	69	55	7	0	36	1.29
407277--407318	20	2.2	19	87	12	59	59	7	0	33	1.25
416720--416813	37	2.5	36	75	16	93	62	2	0	35	1.07
416935--416968	12	2.8	12	86	0	50	70	8	2	17	1.25
417641--417721	21	4.0	21	71	16	71	6	2	17	74	1.14
417653--417820	12	15.2	11	68	14	60	6	3	19	70	1.24
417623--417691	23	3.0	23	72	10	70	2	2	18	75	1.06
417626--417709	21	3.8	22	75	13	75	5	2	16	75	1.11
417735--417783	24	2.0	24	96	0	89	4	6	20	69	1.27
417735--417803	24	2.9	24	87	6	79	5	4	20	69	1.27
425172--425208	18	2.0	19	89	5	58	16	24	0	59	1.37
428319--428461	47	3.0	47	84	0	178	21	10	25	42	1.84
435792--435896	41	2.6	41	85	0	147	26	20	19	34	1.96
438927--439081	24	6.5	24	88	3	215	14	39	20	25	1.91
440709--440811	32	3.2	32	66	22	90	25	11	19	43	1.84
440700--440826	63	2.0	63	93	0	218	26	11	20	41	1.85

Tables:   1   2

The End!