genome.fa.s15065.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015065.1 Kokia drynarioides strain JFW-HI SEQ_130109, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  941295

Tables:   1   2   3   

This is table  1  of  3  ( 344 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1930--2029	23	4.3	23	69	14	71	48	23	19	10	1.78
8794--8841	24	2.0	24	100	0	96	54	4	8	33	1.50
10340--10406	30	2.3	30	78	2	73	55	13	1	29	1.47
11883--11968	35	2.4	36	81	7	97	62	2	3	31	1.24
13560--13635	40	1.9	40	83	5	100	53	7	2	35	1.44
23470--23494	5	5.0	5	100	0	50	0	20	60	20	1.37
29039--29069	2	15.5	2	100	0	62	51	0	48	0	1.00
31646--31693	22	2.2	22	96	3	89	75	0	8	16	1.04
33996--34062	27	2.4	28	82	9	75	62	1	1	34	1.13
34181--34208	14	2.0	14	100	0	56	71	0	0	28	0.86
50208--50295	29	2.9	30	77	8	99	26	12	21	39	1.89
63253--63484	117	2.0	115	89	5	351	39	21	13	26	1.90
75780--75844	34	1.9	34	90	0	103	46	3	33	16	1.63
77311--77530	37	5.9	37	88	0	341	36	31	19	12	1.89
83754--83806	26	2.0	28	81	7	65	50	1	1	45	1.23
84175--84233	26	2.3	26	100	0	118	30	20	16	32	1.95
92172--92214	19	2.2	20	84	8	54	30	4	2	62	1.28
95609--95638	3	10.0	3	92	0	51	33	36	0	30	1.58
98774--98802	6	4.8	6	100	0	58	0	0	48	51	1.00
104473--104527	28	1.9	29	92	3	94	43	7	9	40	1.64
104982--105051	33	2.1	33	86	5	97	30	7	2	60	1.38
122425--122486	30	2.1	30	100	0	124	43	9	6	40	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
130028--130107	29	2.7	29	81	15	83	48	7	6	37	1.57
134910--134938	4	7.5	4	92	7	51	0	75	0	24	0.80
159094--159140	19	2.5	19	82	3	60	48	2	0	48	1.13
165824--165855	1	32.0	1	93	0	55	0	3	0	96	0.20
166515--166547	10	3.4	10	91	8	59	63	0	0	36	0.95
166515--166546	9	3.4	9	95	4	55	62	0	0	37	0.95
170506--170579	14	5.4	14	73	9	53	16	2	10	70	1.27
170506--170547	22	1.9	22	95	0	75	11	0	11	76	1.03
170966--171021	20	2.5	24	75	18	59	64	0	5	30	1.16
174070--174191	62	2.0	62	100	0	244	41	11	11	35	1.77
176856--176988	61	2.2	61	94	2	232	25	15	9	48	1.76
176890--176982	30	3.1	30	71	20	102	23	17	9	49	1.76
176968--176995	13	2.2	13	100	0	56	35	21	7	35	1.81
177208--177281	31	2.4	31	86	0	94	44	12	18	24	1.84
183707--183737	6	5.2	6	100	0	62	0	0	19	80	0.71
191298--191441	55	2.8	52	76	12	150	55	10	2	31	1.48
191393--191552	61	2.7	60	85	7	225	53	12	8	25	1.66
191930--191971	17	2.7	15	77	22	50	61	0	0	38	0.96
193256--193520	131	2.0	132	98	0	514	30	14	18	36	1.91
197984--198075	36	2.5	36	84	8	107	44	5	2	47	1.38
197984--198089	36	2.9	36	79	12	103	41	7	1	49	1.42
210794--210822	2	14.5	2	100	0	58	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
214590--214619	14	2.1	14	100	0	60	33	16	16	33	1.92
224110--224138	3	9.7	3	100	0	58	34	65	0	0	0.93
226624--226654	2	16.0	2	93	6	55	48	0	0	51	1.00
228091--228115	6	4.2	6	100	0	50	0	16	52	32	1.44
232133--232173	2	20.5	2	100	0	82	48	0	0	51	1.00
233415--233537	59	2.1	57	92	3	201	29	19	16	34	1.93
236180--236224	21	2.1	21	91	0	72	24	4	4	66	1.29
244314--244366	26	2.0	26	82	7	63	49	1	3	45	1.31
244443--244470	3	9.3	3	100	0	56	67	0	0	32	0.91
245999--246044	23	2.0	23	83	4	58	47	4	8	39	1.54
251389--251415	2	13.5	2	100	0	54	48	0	0	51	1.00
254086--254221	68	2.0	68	97	0	254	36	12	11	39	1.80
258315--258339	11	2.3	11	100	0	50	8	0	0	92	0.40
260383--260439	12	4.9	11	81	12	60	73	0	24	1	0.92
260394--260436	4	10.8	4	85	9	61	76	0	23	0	0.78
260394--260435	21	2.0	21	90	9	68	76	0	23	0	0.79
260433--260469	9	4.3	9	83	10	51	54	0	45	0	1.00
260985--261034	16	3.2	16	71	21	52	60	6	0	34	1.21
262281--262365	43	2.0	43	81	9	102	30	10	9	49	1.69
262933--263040	45	2.4	46	90	3	166	35	25	19	20	1.96
262935--263055	45	2.7	45	87	2	145	34	22	22	20	1.97
263345--263409	28	2.3	28	86	0	85	46	26	7	20	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
266540--266606	4	17.0	4	75	9	57	0	29	1	68	0.98
270012--270037	7	3.7	7	100	0	52	73	0	0	26	0.84
270010--270043	14	2.5	13	86	13	50	73	0	2	23	0.97
274403--274528	61	2.1	61	100	0	252	19	12	25	42	1.86
275847--275896	20	2.5	19	81	12	55	20	2	20	58	1.50
280614--280681	29	2.3	29	87	5	102	39	10	14	35	1.80
282153--282841	231	3.0	231	93	0	1103	25	9	33	30	1.89
300247--300321	29	2.5	29	84	6	87	37	4	6	52	1.47
300271--300327	29	1.9	30	92	7	98	31	3	7	57	1.42
305820--305922	51	2.0	52	81	12	124	38	9	27	24	1.86
320435--320485	21	2.4	22	78	15	54	50	0	1	47	1.12
326019--326127	51	2.1	51	88	3	157	35	11	29	22	1.90
326078--326235	60	2.6	60	84	2	192	34	14	29	20	1.93
330938--330970	15	2.3	15	89	5	50	57	0	0	42	0.98
331564--331888	109	3.0	109	84	4	415	42	14	19	23	1.88
338808--338855	20	2.4	18	78	18	51	52	0	0	47	1.00
339526--339569	23	2.0	22	86	4	61	52	2	0	45	1.13
352219--352264	18	2.6	17	83	12	58	17	0	13	69	1.19
353539--353585	17	2.8	17	84	9	60	63	0	0	36	0.94
358027--358344	168	1.9	166	92	3	532	44	4	5	45	1.47
360527--360584	28	2.1	28	86	0	80	44	22	12	20	1.84
373049--373078	16	1.9	15	93	6	51	43	6	0	50	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
376408--376492	38	2.2	38	87	4	118	29	23	21	25	1.99
377673--377712	20	2.0	20	85	0	53	32	37	7	22	1.82
383015--383051	16	2.2	17	86	13	51	40	18	0	40	1.51
384393--384465	22	3.5	22	73	17	82	53	20	0	26	1.46
384417--384484	19	3.4	19	70	18	57	52	20	0	26	1.46
384392--384494	41	2.5	41	95	1	181	53	20	0	26	1.46
392979--393035	29	1.9	30	85	3	80	28	5	8	57	1.50
393578--393622	23	2.0	23	83	8	58	42	2	2	53	1.25
410687--410726	21	1.9	21	84	0	53	30	10	37	22	1.87
413987--414039	27	2.0	27	92	0	88	32	26	13	28	1.93
413997--414050	27	2.0	27	88	0	81	33	27	14	24	1.94
414075--414140	26	2.5	27	82	9	82	27	27	16	28	1.97
419387--419542	30	5.1	30	80	4	127	38	3	20	37	1.71
420739--420785	24	1.9	25	91	4	78	17	0	40	42	1.49
420884--420933	18	2.7	17	82	14	55	10	0	10	80	0.92
421366--421524	46	3.5	45	85	2	219	22	20	23	32	1.98
421802--422225	49	8.7	48	75	3	362	20	29	14	34	1.93
421812--422223	147	2.8	146	82	2	439	20	29	14	34	1.93
425062--425225	81	2.0	81	95	0	292	34	12	17	35	1.87
425156--425372	112	1.9	112	88	0	326	38	12	19	29	1.88
425684--425732	7	6.7	7	83	6	62	0	14	0	85	0.59
425684--425732	21	2.2	22	89	7	73	0	14	0	85	0.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
431233--431426	30	6.4	30	78	6	162	38	2	22	36	1.68
431222--431426	61	3.4	60	74	12	165	40	2	20	36	1.66
433125--433352	42	5.4	42	80	5	174	25	25	12	36	1.91
433281--433361	41	2.0	41	90	4	128	24	28	12	34	1.92
434488--434515	3	9.3	3	100	0	56	0	0	32	67	0.91
434964--435178	51	4.2	50	70	13	152	44	2	9	43	1.51
434957--435362	151	2.7	148	87	6	565	46	3	8	41	1.50
435247--435306	33	1.9	30	83	16	77	38	3	8	50	1.49
435248--435305	19	3.3	19	65	20	54	37	3	8	50	1.50
435330--435405	38	1.9	38	86	5	107	56	1	6	35	1.34

Tables:   1   2   3