genome.fa.s15065.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015065.1 Kokia drynarioides strain JFW-HI SEQ_130109, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  941295

Tables:   1   2   3   

This is table  3  of  3  ( 344 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
638631--638661	16	1.9	16	93	0	53	54	3	0	41	1.16
641386--641467	40	2.0	40	97	0	155	24	8	14	52	1.69
643941--643986	6	7.7	6	95	0	83	19	0	47	32	1.50
655409--655464	24	2.3	26	76	14	66	57	0	1	41	1.09
658988--659022	14	2.5	15	86	13	56	62	0	0	37	0.95
659449--659548	20	5.2	20	72	6	89	41	13	7	39	1.71
660267--660316	20	2.5	19	75	9	55	42	2	12	44	1.53
660267--660323	20	2.8	19	71	10	51	40	1	12	45	1.52
665511--665568	29	2.0	28	90	3	89	12	8	24	55	1.64
668264--668297	17	1.9	17	88	5	50	44	17	5	32	1.73
671595--671650	28	2.0	28	96	0	103	42	14	12	30	1.82
691845--692311	59	7.9	57	80	8	453	40	3	23	32	1.72
691819--692311	118	4.2	115	80	8	503	39	3	23	32	1.72
692221--692324	28	3.5	28	81	13	113	31	0	30	36	1.64
693361--693430	3	23.3	3	77	11	72	34	2	1	61	1.20
693347--693419	24	3.2	23	76	16	80	35	2	1	60	1.20
693365--693453	12	7.4	12	73	13	76	38	3	2	56	1.29
694169--694225	12	4.8	12	76	18	57	54	1	1	42	1.21
694167--694225	18	3.3	18	83	9	77	52	1	1	44	1.21
694167--694210	6	7.5	6	87	5	63	50	2	0	47	1.13
694348--694398	24	2.1	24	92	0	84	23	11	7	56	1.61
694356--694410	24	2.3	24	87	0	74	27	14	9	49	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
709333--709390	21	2.8	21	91	0	98	29	15	22	32	1.95
720989--721013	2	12.5	2	100	0	50	52	0	48	0	1.00
721420--721499	29	2.8	29	80	3	108	57	2	2	37	1.26
722823--722905	29	2.9	28	80	5	96	28	3	13	54	1.56
722823--722924	29	3.4	29	71	16	75	30	4	13	50	1.62
731398--731730	168	2.0	168	96	0	621	37	13	11	37	1.81
733485--733528	18	2.4	18	92	3	70	43	13	11	31	1.80
733539--733584	23	2.0	23	86	0	65	34	19	13	32	1.90
734533--734656	59	2.1	58	92	2	212	41	16	7	34	1.75
739627--739687	10	6.2	9	78	14	59	3	26	0	70	1.02
739641--739688	3	15.0	3	79	12	51	2	29	0	68	1.01
739641--739687	7	7.1	7	85	9	64	2	27	0	70	0.99
745033--745077	20	2.2	20	88	0	63	33	2	4	60	1.29
746152--746190	7	5.6	7	100	0	78	43	12	28	15	1.83
748997--749054	22	2.5	24	75	13	68	48	1	1	48	1.22
749790--749832	16	2.6	17	85	10	54	41	2	2	53	1.26
750959--751015	21	3.0	18	76	14	60	21	21	24	33	1.97
750960--751001	21	2.0	21	95	0	75	16	19	28	35	1.93
751179--751252	21	3.3	22	76	9	60	39	18	21	20	1.93
758189--758228	20	2.0	20	100	0	80	40	15	10	35	1.80
775074--775131	21	2.7	22	82	12	68	67	0	27	5	1.12
775080--775131	9	5.4	9	80	11	59	71	0	26	1	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
775538--775575	17	2.2	17	90	0	58	23	13	10	52	1.71
781064--781120	23	2.7	21	82	12	71	42	10	3	43	1.56
781080--781130	18	2.5	20	81	18	61	39	13	1	45	1.55
781713--781758	23	2.0	23	83	8	58	32	15	8	43	1.77
781717--781788	35	2.0	35	81	7	83	43	15	8	33	1.76
784524--784573	20	2.5	20	80	3	55	60	10	2	28	1.40
786399--786438	17	2.4	17	87	8	55	60	22	5	12	1.52
787915--788064	45	3.3	45	69	7	142	36	6	19	38	1.76
792496--792525	14	2.1	14	93	0	51	16	10	0	73	1.09
796294--796375	36	2.3	35	83	8	96	36	0	3	59	1.15
796347--796381	11	3.1	11	91	4	52	22	0	11	65	1.24
801662--801692	15	2.1	15	93	0	53	35	0	0	64	0.94
801785--801837	23	2.5	20	76	11	54	71	0	0	28	0.86
809957--809998	18	2.3	18	91	0	66	28	9	21	40	1.84
820625--820685	29	2.1	29	84	3	79	62	9	9	18	1.53
821054--821109	26	2.2	26	80	6	60	64	7	16	12	1.48
826409--826719	43	7.3	43	79	3	333	33	27	14	24	1.94
826409--826719	85	3.6	86	85	2	394	33	27	14	24	1.94
831009--831534	41	12.7	41	80	6	508	17	29	21	32	1.96
831282--831460	89	2.0	89	82	0	214	18	30	21	29	1.97
857335--857461	63	2.0	63	96	0	236	34	11	28	25	1.90
859280--859328	22	2.2	22	92	0	80	14	26	28	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
860175--861106	463	2.0	463	93	0	1580	31	19	14	34	1.92
868170--868198	12	2.3	13	94	5	51	0	31	3	65	1.09
879787--880149	98	3.7	98	84	2	435	38	19	26	16	1.92
879787--880257	98	4.8	97	81	4	403	38	19	25	15	1.92
879980--880298	149	2.2	147	84	1	404	38	19	26	15	1.92
879787--880358	49	11.6	49	70	7	318	37	20	26	15	1.92
880127--880423	98	3.0	97	82	5	346	38	20	25	16	1.92
879937--880402	247	1.9	247	88	1	711	37	19	26	16	1.93
880868--880956	17	5.1	18	82	9	105	44	1	2	51	1.21
880882--880956	6	12.8	6	73	16	68	45	1	1	52	1.17
880868--880956	18	5.1	17	80	12	85	44	1	2	51	1.21
880892--880954	24	2.7	24	81	16	78	44	1	1	52	1.20
880868--880970	35	2.9	35	79	9	104	44	1	1	51	1.23
880882--880970	18	5.1	18	75	15	80	44	2	1	51	1.21
881487--881561	30	2.5	30	95	2	134	42	20	5	32	1.74
881527--881896	59	6.3	57	80	8	363	30	24	4	40	1.74
881538--881971	117	3.7	118	79	8	442	30	25	3	40	1.73
881536--881971	59	7.5	56	75	16	322	30	25	3	40	1.73
881525--881970	175	2.5	174	80	8	485	31	24	3	39	1.73
881937--882036	29	3.5	27	75	12	67	31	29	8	32	1.86
887972--888005	16	2.2	15	89	5	50	38	0	0	61	0.96
888784--888832	22	2.3	20	86	6	62	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
888892--888942	22	2.3	23	79	3	59	50	7	0	41	1.31
898948--899011	17	3.7	17	71	19	60	20	35	1	42	1.62
898938--899006	35	2.0	35	91	0	111	18	36	2	42	1.66
906889--906937	18	2.7	17	78	12	53	69	4	2	24	1.17
907699--907777	36	2.2	36	95	0	140	31	5	26	36	1.78
916899--917189	161	1.8	157	87	4	431	30	14	19	35	1.92
919090--919207	45	2.6	45	89	1	164	34	27	6	31	1.83
919251--919451	93	2.2	93	86	1	278	30	45	4	18	1.71
919434--919540	30	3.6	30	81	0	142	23	49	5	21	1.70
919464--919608	78	1.9	78	88	0	218	24	48	5	20	1.70
920254--920305	22	2.5	21	87	6	70	57	9	3	28	1.48
920268--920314	22	2.1	22	84	7	60	59	6	4	29	1.41
923883--923955	31	2.4	30	84	6	92	46	6	16	30	1.73
925553--925638	36	2.4	36	96	0	154	19	9	37	33	1.84
927373--927397	6	4.2	6	100	0	50	36	0	0	64	0.94
933452--933504	23	2.3	22	81	9	61	47	3	7	41	1.50

Tables:   1   2   3

The End!