genome.fa.s15065.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015065.1 Kokia drynarioides strain JFW-HI SEQ_130109, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  941295

Tables:   1   2   3   

This is table  2  of  3  ( 344 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
435181--435521	187	1.8	186	83	10	455	46	2	8	41	1.50
435367--435494	52	2.5	52	76	12	136	43	1	9	45	1.45
436078--436123	16	2.8	17	83	6	58	19	8	2	69	1.25
438941--438993	6	8.2	6	78	15	52	75	7	0	16	1.02
438931--438985	22	2.6	20	72	13	56	76	5	0	18	0.97
438958--438993	6	6.0	6	90	0	54	77	2	0	19	0.88
441115--441172	20	2.9	20	82	10	73	41	0	3	55	1.17
442418--442443	6	4.3	6	100	0	52	65	0	0	34	0.93
444568--444606	3	13.0	3	100	0	78	33	0	0	66	0.92
452688--452747	20	3.0	20	79	16	63	36	1	0	61	1.06
452705--452752	18	2.7	18	81	9	53	31	0	2	66	1.03
452741--452782	21	1.9	23	85	9	61	42	2	2	52	1.27
454740--454816	38	2.0	38	94	0	136	29	18	15	36	1.92
455641--455737	21	4.7	21	74	2	79	31	22	15	29	1.95
455683--455737	20	2.7	20	80	2	65	34	21	14	29	1.93
455639--455737	41	2.4	42	83	5	112	31	22	15	31	1.94
455772--455811	21	1.9	21	84	0	53	32	25	15	27	1.95
459031--459066	18	2.0	18	100	0	72	27	16	22	33	1.95
462242--462284	19	2.3	19	84	8	52	58	4	0	37	1.19
462713--462770	21	2.8	21	84	5	73	32	24	12	31	1.91
463534--463570	18	2.1	18	94	0	65	32	27	13	27	1.94
463552--463772	52	4.2	52	86	2	273	33	23	15	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
466315--466458	35	4.0	35	83	3	171	27	23	13	34	1.93
468909--468979	27	2.5	27	77	6	70	26	23	8	40	1.83
469923--469981	24	2.5	24	88	0	91	47	13	11	27	1.78
471890--471952	24	2.6	24	87	0	90	49	11	14	25	1.76
471996--472054	28	2.1	28	87	6	84	47	0	1	50	1.11
477522--477607	23	3.7	23	80	0	73	18	15	20	45	1.85
477553--477609	23	2.5	23	85	0	78	14	15	24	45	1.83
482180--482226	22	2.0	23	84	8	60	38	8	23	29	1.84
484806--484889	23	3.7	23	78	0	105	14	20	23	41	1.89
495204--495481	138	2.0	138	95	0	493	25	11	16	46	1.80
499649--499967	177	1.8	177	88	2	498	38	16	10	35	1.83
499669--500033	89	4.1	91	81	9	403	37	16	10	34	1.84
504999--505808	353	2.3	354	87	3	1143	42	13	12	30	1.82
506063--506087	7	3.6	7	100	0	50	12	0	28	60	1.32
507418--507518	53	1.9	53	83	0	130	21	17	31	28	1.96
507968--508072	40	2.6	40	87	0	138	40	23	14	20	1.89
510311--510394	43	2.0	43	85	0	114	19	14	35	30	1.91
510353--510587	53	4.4	55	78	5	162	20	16	34	28	1.94
510380--510581	53	3.8	52	80	2	206	21	18	34	25	1.96
511834--512122	52	5.6	52	92	0	456	36	23	13	26	1.92
512662--512697	18	2.1	16	90	10	54	30	16	0	52	1.44
517106--517338	52	4.5	52	84	4	292	25	14	23	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
518857--518944	29	3.1	29	80	1	97	22	19	18	39	1.92
519876--519956	41	2.0	41	90	0	126	53	6	8	32	1.56
519948--520069	64	1.9	63	86	5	174	56	12	14	16	1.67
521329--521377	24	2.0	24	100	0	98	67	12	12	8	1.42
522729--522756	3	9.3	3	100	0	56	67	0	32	0	0.91
524591--524656	28	2.4	28	92	0	105	28	10	21	39	1.86
524648--524850	30	6.9	30	81	7	220	32	6	26	34	1.83
524648--524851	88	2.3	88	88	4	286	32	6	25	34	1.83
526674--526958	46	6.2	46	75	10	170	27	15	22	35	1.94
526663--526932	139	1.9	139	80	1	308	26	15	22	34	1.95
527213--527304	48	1.9	48	88	0	139	26	23	11	38	1.90
527033--527749	123	5.8	123	87	0	959	22	20	17	40	1.92
527334--527428	48	2.0	48	91	0	154	18	20	18	42	1.90
527524--528113	198	3.0	198	84	1	788	21	19	17	41	1.91
527628--527824	75	2.6	75	77	3	225	22	19	17	41	1.91
527828--528003	75	2.3	75	85	0	226	18	18	19	43	1.88
527856--528020	75	2.2	75	83	0	213	22	17	20	40	1.92
527903--528165	123	2.1	122	86	2	357	20	19	18	41	1.90
527279--528163	321	2.8	319	72	9	860	21	19	17	41	1.91
528275--528388	42	2.7	42	76	2	104	20	23	13	42	1.87
528395--528700	49	6.3	49	73	3	231	20	24	18	35	1.95
528446--528560	48	2.4	49	79	4	126	18	19	20	41	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
528397--528671	146	1.9	146	82	3	347	20	25	18	35	1.95
534811--535012	59	3.4	59	78	8	198	35	9	21	33	1.86
534811--535012	29	6.9	30	75	12	186	35	9	21	33	1.86
534811--535024	30	7.3	29	74	13	163	35	9	22	32	1.86
535525--535555	14	2.3	14	94	5	55	19	6	0	74	1.03
537024--537083	30	2.0	30	87	9	88	28	18	25	28	1.98
538773--539002	85	2.7	85	86	3	322	28	12	13	45	1.79
539322--539362	15	2.9	15	75	24	52	39	7	17	36	1.77
540564--540605	19	2.2	20	86	4	59	21	7	26	45	1.77
573961--574006	21	2.2	21	84	7	58	19	45	4	30	1.70
576468--576600	39	3.4	39	78	4	124	25	21	19	33	1.97
576541--576667	67	1.9	67	85	0	173	25	15	22	37	1.93
583202--583609	29	14.1	29	75	10	257	36	25	3	34	1.72
595492--595851	78	4.6	78	82	0	416	24	30	18	26	1.98
595609--595820	39	5.5	39	72	11	166	24	33	17	25	1.96
595492--595851	155	2.3	155	84	4	447	24	30	18	26	1.98
595648--595851	39	5.3	39	71	5	137	23	31	18	26	1.97
596373--596453	11	7.0	12	79	12	80	40	1	1	56	1.15
596374--596455	6	14.2	6	77	12	91	41	1	1	56	1.15
596374--596452	17	4.6	17	88	3	122	40	1	1	56	1.15
596374--596455	23	3.3	23	71	23	76	41	1	1	56	1.15
596374--596452	35	2.3	34	91	6	124	40	1	1	56	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
596385--596455	29	2.4	29	81	9	92	42	1	1	54	1.17
598435--598653	29	7.6	29	77	11	168	36	23	3	36	1.71
598407--598544	29	4.7	29	83	8	122	39	20	2	38	1.65
598407--598594	87	2.1	88	82	6	220	38	21	2	37	1.68
598543--598651	56	1.9	56	92	1	182	34	25	4	34	1.77
600608--600656	24	2.0	24	88	7	73	38	8	10	42	1.68
605456--605480	2	12.5	2	100	0	50	52	0	0	48	1.00
605620--605724	27	3.7	27	75	16	97	23	14	10	51	1.73
605599--605696	31	3.3	30	75	16	105	25	12	11	51	1.72
605599--605724	58	2.2	59	89	4	193	25	13	11	50	1.74
605685--605758	28	2.6	28	80	2	94	27	13	13	45	1.81
605906--606097	89	2.1	90	80	4	219	45	11	15	27	1.80
611149--611192	16	2.8	16	89	0	70	22	4	22	50	1.67
611178--611448	23	11.9	23	86	2	336	33	5	14	46	1.66
611178--611448	68	4.0	69	88	2	379	33	5	14	46	1.66
611178--611448	91	3.0	90	86	4	350	33	5	14	46	1.66
612618--612701	42	2.0	42	97	0	159	36	26	8	28	1.85
613883--614141	30	8.8	30	78	7	262	37	26	0	35	1.62
613888--614143	59	4.3	59	79	6	243	36	26	0	36	1.62
613883--614143	89	2.9	89	82	4	305	37	26	0	35	1.62
622407--622566	85	1.9	85	87	5	234	36	16	24	22	1.94
622383--623365	208	4.7	208	86	4	1368	39	18	19	22	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
622608--622774	85	2.0	85	85	0	226	40	15	20	22	1.90
622865--622935	37	1.9	37	91	0	115	39	18	18	23	1.92
622817--622982	85	2.0	85	82	2	208	40	16	19	24	1.91
623034--623196	85	1.9	85	88	2	247	37	17	22	22	1.94
623541--623707	85	2.0	85	83	2	210	36	17	21	23	1.95
623454--623974	209	2.5	209	90	2	807	38	18	19	22	1.93
623752--623916	85	1.9	85	86	2	233	40	16	20	22	1.92
625712--625997	59	4.8	59	76	12	248	36	23	1	39	1.62
625709--625997	30	9.8	28	78	12	201	35	23	1	39	1.62
628479--628516	14	2.7	14	95	0	67	44	2	13	39	1.57

Tables:   1   2   3