genome.fa.s15085.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015085.1 Kokia drynarioides strain JFW-HI SEQ_130129, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  897486

Tables:   1   2   3   

This is table  1  of  3  ( 272 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5984--6026	18	2.4	17	81	11	50	58	0	2	39	1.11
17146--17947	266	3.0	265	90	2	1243	31	18	22	27	1.97
21095--21214	58	2.1	58	81	7	136	28	17	12	41	1.86
21438--21496	31	1.9	31	86	6	84	49	3	15	32	1.61
25627--26042	142	3.0	135	77	13	421	21	11	28	37	1.88
29325--29349	8	3.1	8	100	0	50	64	12	0	24	1.27
36714--36752	21	1.9	20	84	5	51	64	15	5	15	1.46
39227--39264	10	3.8	10	92	0	58	7	34	0	57	1.28
41654--41719	31	2.1	31	97	0	123	34	15	10	39	1.82
69388--69442	21	2.6	21	88	0	74	23	14	27	34	1.94
71982--72057	11	6.8	11	70	24	52	55	2	1	40	1.22
71950--72056	20	5.8	18	71	18	69	53	3	1	41	1.30
71982--72057	37	2.1	36	85	11	102	55	2	1	40	1.22
72856--73122	36	7.4	36	87	0	345	35	23	9	31	1.87
72856--73122	108	2.5	108	89	0	399	35	23	9	31	1.87
75012--75067	22	2.5	22	91	2	85	23	17	8	50	1.74
75104--75165	30	2.1	30	90	0	97	25	4	12	56	1.56
76450--76636	62	2.8	66	75	15	197	41	4	4	49	1.43
89434--89484	25	2.0	25	96	0	93	25	19	33	21	1.97
95794--97131	228	5.9	228	85	1	1385	23	23	22	31	1.99
95794--97130	684	2.0	684	82	1	1622	23	23	22	31	1.99
98270--98336	29	2.3	30	84	2	82	47	8	13	29	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
116029--116062	16	2.2	16	89	5	52	67	2	2	26	1.19
116739--117031	59	4.9	60	84	6	292	35	24	2	37	1.70
116732--117031	119	2.5	118	81	3	318	35	24	2	37	1.70
116739--117031	30	9.9	30	77	5	274	35	24	2	37	1.70
126607--126639	3	11.0	3	100	0	66	66	0	33	0	0.92
129012--129882	78	11.2	78	78	3	781	24	31	19	25	1.98
129012--129892	39	22.6	39	70	12	325	24	31	19	24	1.98
130182--130277	48	2.0	48	81	4	113	40	14	19	25	1.90
130670--130725	6	9.7	6	79	13	55	42	0	0	57	0.99
130673--130723	17	3.1	17	88	5	86	39	0	0	60	0.97
132311--132464	30	5.2	30	81	6	172	37	22	1	39	1.62
132311--132464	59	2.6	58	81	9	193	37	22	1	39	1.62
132979--133082	50	2.1	50	96	0	190	43	11	7	37	1.70
133827--133893	23	2.9	23	82	4	82	43	23	19	13	1.86
147697--147945	124	2.0	124	96	0	462	31	20	16	32	1.94
154483--154533	26	1.9	27	84	11	70	58	3	19	17	1.54
156811--157142	166	2.0	168	90	1	533	31	16	20	30	1.95
159907--160140	82	2.9	82	90	0	371	29	16	16	37	1.91
164406--164451	21	2.1	22	92	4	76	13	17	6	63	1.50
168185--168224	21	1.9	21	90	10	64	7	15	10	67	1.41
171238--171282	10	4.3	11	78	15	51	2	22	0	75	0.91
180135--180181	22	2.0	23	84	12	60	44	4	14	36	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
180145--180194	22	2.2	22	82	3	64	44	6	16	34	1.72
194468--194504	17	2.2	17	90	0	56	21	16	10	51	1.74
206621--206670	26	1.9	26	84	8	66	44	16	4	36	1.66
207740--207797	28	2.1	28	100	0	116	46	10	3	39	1.55
208788--208813	13	2.0	13	100	0	52	38	15	7	38	1.76
214413--214508	27	3.6	27	84	0	138	27	16	19	36	1.93
214502--214595	24	3.9	24	84	2	93	23	23	25	27	2.00
221247--221297	26	2.0	26	88	7	77	25	7	5	60	1.47
229646--229732	38	2.3	38	91	0	138	25	24	13	36	1.92
229990--230031	18	2.4	18	88	4	59	61	9	9	19	1.53
236588--236620	14	2.3	15	89	5	50	66	0	27	6	1.15
245709--245766	29	2.0	29	100	0	116	31	17	17	34	1.93
250108--250134	6	4.5	6	100	0	54	0	14	0	85	0.61
271300--271338	20	1.9	20	89	5	60	58	2	0	38	1.12
271312--271365	28	1.9	28	85	14	76	48	1	0	50	1.11
279521--279658	26	5.3	26	80	1	116	36	23	13	26	1.91
279521--279658	52	2.7	52	74	2	143	36	23	13	26	1.91
283363--283415	19	2.8	19	91	0	79	24	35	15	24	1.94
286180--286226	21	2.2	21	84	0	58	25	19	19	36	1.95
286207--286233	14	1.9	14	100	0	54	18	22	29	29	1.97
287277--287304	13	2.2	13	100	0	56	21	0	0	78	0.75
298133--298210	30	2.6	28	82	13	86	37	19	2	41	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
310973--311153	95	1.9	95	90	2	292	39	14	14	31	1.87
322503--322618	58	2.0	58	81	3	135	39	13	14	31	1.86
322718--322894	68	2.6	68	74	4	176	24	20	22	32	1.98
327155--327271	62	1.9	59	84	5	153	48	4	5	41	1.45
327282--327357	11	6.8	11	70	24	52	55	3	1	39	1.27
349421--349760	153	2.2	151	84	5	445	42	3	10	43	1.55
349423--349647	51	4.5	51	72	12	167	41	2	8	47	1.49
350519--350583	27	2.7	22	79	20	85	46	4	7	41	1.53
360500--360637	36	3.9	36	82	7	174	35	17	24	22	1.95
360500--360635	70	1.9	72	86	3	195	35	17	24	22	1.95
363470--363502	12	2.8	12	95	4	59	30	36	0	33	1.58
383081--383119	18	2.1	19	85	9	53	43	15	0	41	1.46
384660--384722	30	2.1	30	100	0	126	46	6	6	41	1.55
406741--406781	18	2.3	18	91	0	64	9	24	9	56	1.62
407684--407734	7	6.7	7	79	20	50	66	0	3	29	1.09
407681--407727	16	2.9	16	84	9	60	65	0	4	29	1.11
407680--407716	9	4.3	9	80	13	51	67	0	2	29	1.04
407678--407731	25	2.2	25	83	9	76	68	0	3	27	1.06
408452--408510	29	2.0	29	83	6	75	54	11	1	32	1.47
414728--414761	16	2.1	16	100	0	68	50	11	5	32	1.63
414899--414924	12	2.2	12	100	0	52	42	15	7	34	1.75
416578--416696	9	12.7	9	71	13	71	26	4	0	68	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
416579--416696	10	12.2	10	70	15	54	26	4	0	68	1.13
416589--416696	28	3.8	28	71	17	89	26	4	0	67	1.16
417136--417215	24	3.2	24	67	19	74	25	13	0	61	1.33
417117--417218	50	2.0	50	100	0	204	25	11	0	62	1.29
419458--419570	27	4.2	27	83	1	129	26	17	28	27	1.98
419939--419999	16	4.2	16	68	23	53	27	3	9	59	1.45
419955--420002	26	2.0	23	95	0	60	27	2	10	60	1.41
421434--421498	27	2.4	27	82	5	78	16	30	26	26	1.97
421825--421883	27	2.2	27	78	6	66	62	6	0	30	1.21
421855--422096	128	1.9	127	88	5	371	47	15	0	36	1.49
430550--430725	70	2.5	70	92	0	298	28	17	13	40	1.87
431287--431322	19	1.9	18	88	5	54	50	5	5	38	1.49
437360--437403	2	22.5	2	90	4	72	50	47	0	2	1.13
439209--439320	56	2.0	57	89	1	172	48	4	7	40	1.51
439943--439975	14	2.3	15	89	5	50	45	6	0	48	1.27
440311--440384	29	2.5	28	75	12	69	35	2	8	54	1.44
442755--442796	11	3.8	11	83	0	57	73	14	9	2	1.18
443901--443936	16	2.1	16	90	10	54	55	0	0	44	0.99
445513--445571	23	2.6	25	75	20	58	50	1	6	40	1.39
445529--445573	23	2.0	23	90	0	72	48	2	2	46	1.26
455055--455086	16	2.1	16	88	11	50	12	12	9	65	1.47
457004--457031	14	2.0	14	100	0	56	28	14	35	21	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
458942--458994	20	2.7	20	85	5	63	30	7	28	33	1.85
461999--462052	20	2.7	20	79	0	63	29	7	25	37	1.83
463394--463452	31	1.9	31	92	0	100	55	15	8	20	1.65
463690--463714	2	12.5	2	100	0	50	52	0	0	48	1.00
464079--464118	14	2.9	14	88	3	55	67	2	7	22	1.28
465253--465300	24	2.1	23	84	7	62	39	0	4	56	1.19
465786--465852	23	3.0	22	76	8	64	52	5	1	40	1.35
467035--467069	17	2.1	17	89	10	54	45	20	0	34	1.51
470961--471021	28	2.2	27	82	8	70	31	19	26	22	1.98
473160--473202	10	4.3	10	85	8	61	37	2	0	60	1.10

Tables:   1   2   3