genome.fa.s15085.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015085.1 Kokia drynarioides strain JFW-HI SEQ_130129, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  897486

Tables:   1   2   3   

This is table  3  of  3  ( 272 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
778533--778594	26	2.4	25	83	5	70	38	11	9	40	1.74
781831--781897	33	2.0	33	100	0	134	61	8	5	23	1.48
783417--783450	17	2.0	17	88	0	50	41	14	0	44	1.45
789894--789928	13	2.8	13	91	8	56	5	14	0	80	0.89
800733--800771	18	2.2	18	90	0	60	56	0	0	43	0.99
802755--802858	36	2.9	36	88	0	154	36	16	24	23	1.94
808425--808478	7	7.9	7	81	4	65	33	27	24	14	1.94
808425--808478	14	3.9	14	82	4	74	33	27	24	14	1.94
808433--808471	13	2.9	14	84	7	53	30	28	25	15	1.96
808538--808581	23	1.9	23	95	0	79	18	4	34	43	1.70
808591--808645	23	2.4	23	81	3	58	23	1	29	45	1.63
808601--808646	23	2.0	23	86	0	65	21	2	32	43	1.65
812331--812433	36	2.9	36	86	0	143	36	15	25	22	1.93
814821--814873	22	2.3	23	87	6	72	60	7	3	28	1.41
815191--815238	20	2.4	20	76	13	53	66	6	2	25	1.26
817195--817261	34	2.0	34	93	0	116	38	10	14	35	1.81
831840--831880	3	13.7	3	100	0	82	31	0	0	68	0.90
839719--839779	30	2.0	30	100	0	122	40	0	29	29	1.57
840717--840938	42	5.3	42	84	2	239	37	9	27	26	1.87
843171--843216	20	2.2	20	84	3	56	71	0	2	26	0.97
843589--843618	13	2.3	13	94	0	51	23	10	0	66	1.21
849448--849476	15	2.0	15	93	6	51	17	0	6	75	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
852803--852857	25	2.2	24	78	9	56	23	7	7	61	1.47
870831--870996	82	2.0	82	95	0	296	33	10	18	37	1.86
873585--873616	10	2.8	12	86	13	50	75	0	15	9	1.05
873660--873800	68	2.1	68	94	0	246	58	3	28	9	1.47
877944--877970	2	13.5	2	100	0	54	0	0	48	51	1.00
881462--881520	21	2.8	21	82	5	75	32	23	15	28	1.95
881690--881725	18	2.1	18	90	10	58	47	0	2	50	1.15
882219--882326	48	2.3	46	80	7	119	20	15	26	37	1.93
890330--890445	55	2.1	54	84	9	155	27	11	8	52	1.66
893125--893176	16	3.2	16	78	13	52	44	23	1	30	1.64

Tables:   1   2   3

The End!