genome.fa.s15085.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015085.1 Kokia drynarioides strain JFW-HI SEQ_130129, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  897486

Tables:   1   2   3   

This is table  2  of  3  ( 272 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
476313--476363	24	2.1	24	88	0	75	58	9	7	23	1.56
478257--478331	24	3.1	23	84	7	96	58	2	8	30	1.41
479131--479185	18	3.2	17	80	17	60	27	1	0	70	0.97
479131--479185	17	3.2	18	82	12	62	27	1	0	70	0.97
480462--480502	22	1.9	22	85	5	57	14	19	7	58	1.59
482310--482349	21	1.9	21	84	0	53	52	12	35	0	1.39
483101--483142	13	3.2	13	83	6	57	76	0	23	0	0.79
495612--495804	40	4.8	40	80	3	181	37	27	18	16	1.92
501806--501891	28	3.1	27	81	5	100	24	19	9	46	1.79
502873--503023	80	1.9	78	82	10	191	37	19	8	34	1.82
505130--505220	38	2.4	37	78	7	101	60	2	28	8	1.38
506230--506263	17	2.0	17	100	0	68	35	11	11	41	1.78
514465--514622	70	2.3	70	90	0	253	32	15	20	31	1.93
515560--515850	52	5.6	52	90	1	424	36	24	14	25	1.93
521137--521323	52	3.6	52	84	4	227	36	23	12	27	1.90
531044--531086	3	14.0	3	90	4	68	62	2	0	34	1.08
531577--531609	2	16.5	2	100	0	66	51	0	0	48	1.00
533181--533335	9	16.6	9	70	15	66	60	2	2	34	1.24
533204--533277	30	2.5	30	84	8	98	59	0	1	39	1.06
533555--533742	9	20.3	9	65	17	55	30	5	2	62	1.29
533521--533594	19	3.7	20	72	20	57	28	6	4	60	1.40
541718--541763	24	1.9	24	86	0	65	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
548146--548174	2	14.5	2	100	0	58	48	0	0	51	1.00
548356--548398	17	2.5	17	84	3	50	20	25	2	51	1.60
548503--548535	16	2.0	17	94	5	59	30	21	0	48	1.50
548972--549024	23	2.3	23	80	3	63	45	1	7	45	1.42
553297--553421	30	4.2	30	81	3	137	33	5	22	38	1.78
553297--553410	59	1.9	58	87	1	165	31	5	22	40	1.76
554618--554661	4	11.2	4	85	4	63	72	0	2	25	0.96
554627--554669	19	2.3	19	95	0	77	69	0	0	30	0.88
554711--554740	5	6.0	5	92	0	51	23	0	0	76	0.78
555499--555644	79	1.8	79	88	0	220	26	16	26	30	1.97
555499--555748	40	6.4	40	70	4	179	26	17	25	30	1.97
561156--561370	30	7.3	30	78	5	188	35	3	23	37	1.73
561156--561370	59	3.6	58	77	9	220	35	3	23	37	1.73
561997--562049	16	3.3	17	76	12	58	22	0	3	73	0.99
561986--562051	32	2.1	31	82	2	78	21	0	7	71	1.11
562178--562206	14	2.1	14	100	0	58	75	0	0	24	0.80
562851--562964	20	5.9	20	66	22	64	48	0	0	50	1.06
563348--563373	4	6.5	4	100	0	52	26	0	0	73	0.84
563990--564175	60	3.2	57	81	6	185	25	12	11	49	1.75
565997--566066	36	1.9	36	97	0	131	20	18	20	41	1.91
569447--569482	15	2.3	16	90	4	56	58	0	11	30	1.33
570453--570499	20	2.3	20	81	0	58	21	38	10	29	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
570465--570506	20	2.1	20	90	0	66	16	40	16	26	1.90
571882--571938	24	2.4	24	100	0	114	49	15	17	17	1.81
574852--574890	17	2.3	17	86	8	53	46	23	12	17	1.83
579181--579238	27	2.2	27	87	9	84	65	5	5	24	1.34
587204--587293	44	2.0	44	97	0	171	58	7	4	28	1.45
587672--587714	17	2.5	18	82	17	56	11	18	34	34	1.87
590810--590838	14	2.0	15	93	6	51	17	6	0	75	1.01
597895--597941	3	15.7	3	95	0	85	2	0	29	68	1.02
597871--597944	12	6.2	12	87	0	76	8	1	22	67	1.25
616224--616291	31	2.2	31	94	0	118	41	14	11	32	1.82
623174--623245	35	2.1	35	89	0	108	47	2	11	38	1.54
623337--623381	22	2.0	21	84	16	56	46	0	0	53	1.00
626480--626549	35	2.0	35	88	0	104	48	21	4	25	1.68
631579--631621	21	2.0	21	90	0	68	51	6	2	39	1.42
633471--633588	30	3.9	30	82	3	139	34	5	22	38	1.76
633471--633558	31	2.9	30	87	1	122	31	5	26	36	1.80
634193--634236	22	2.0	22	82	8	54	20	13	6	59	1.57
635237--635363	39	3.2	39	71	8	114	27	16	25	29	1.97
643726--643773	17	2.8	17	80	0	60	56	8	10	25	1.61
643709--643773	34	1.9	34	83	0	85	55	12	10	21	1.67
645470--645524	24	2.3	24	100	0	110	14	12	38	34	1.84
658741--658787	18	2.8	16	81	12	58	70	6	0	23	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
658895--659005	30	3.8	29	75	3	114	36	1	22	39	1.65
659321--659380	31	1.9	32	83	16	81	31	18	0	50	1.47
667406--667436	12	2.6	12	94	0	53	38	12	0	48	1.42
669626--669684	28	2.1	28	96	0	109	35	10	23	30	1.88
676250--676539	70	4.1	70	91	0	463	23	20	21	34	1.97
679311--679378	19	3.7	18	74	16	59	33	7	1	57	1.36
679313--679374	17	3.4	17	69	16	52	32	6	1	59	1.32
684511--684641	61	2.1	61	92	0	217	29	21	14	34	1.93
684590--684779	54	3.6	51	79	6	202	27	26	15	30	1.96
689945--689995	21	2.4	21	86	0	66	27	15	13	43	1.85
689956--690002	21	2.2	21	84	0	58	34	12	17	36	1.87
691522--691561	16	2.5	16	88	8	55	70	0	7	22	1.12
696004--696055	16	3.4	16	68	10	54	30	5	7	55	1.52
695988--696074	30	2.9	30	93	1	149	32	6	10	50	1.63
700899--700926	3	9.3	3	100	0	56	67	0	0	32	0.91
707865--707899	3	11.7	3	100	0	70	65	0	0	34	0.93
708358--708389	14	2.3	14	94	0	55	68	6	9	15	1.36
711069--711125	30	1.9	30	85	7	80	66	3	1	28	1.18
711566--711605	18	2.2	19	86	4	55	47	0	2	50	1.14
711663--711703	21	2.1	20	86	13	59	48	0	0	51	1.00
719605--719637	16	2.1	17	88	11	52	60	0	9	30	1.27
720216--720258	16	2.8	15	75	3	50	65	0	18	16	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
730789--730813	13	1.9	13	100	0	50	96	0	0	4	0.24
730979--731013	17	2.0	18	88	5	54	8	5	5	80	1.03
731414--731466	27	2.0	28	88	7	83	64	11	7	16	1.48
744070--744134	34	1.9	34	81	6	78	50	13	15	20	1.77
744541--744594	21	2.4	21	81	9	63	1	35	0	62	1.06
749511--749535	9	2.8	9	100	0	50	56	12	12	20	1.67
751607--751658	6	8.7	6	77	8	52	15	36	1	46	1.57
754137--754199	31	2.0	31	100	0	126	39	28	9	22	1.85
755168--755245	38	2.1	38	82	0	93	42	1	2	53	1.22
758530--758616	24	3.6	24	87	3	122	54	6	11	27	1.62
759471--759582	30	3.7	30	71	18	90	58	6	1	33	1.33
759815--759865	15	3.7	14	82	15	70	27	1	0	70	0.98
759818--759842	6	4.2	6	100	0	50	20	0	0	80	0.72
760965--760999	12	2.9	12	86	0	52	77	17	0	5	0.96
760991--761064	22	3.4	22	72	7	69	70	14	6	8	1.32
760967--761044	24	3.3	24	75	7	79	74	15	3	6	1.17
760967--761064	44	2.2	46	83	7	121	71	15	5	8	1.28
760967--761064	46	2.2	44	85	3	124	71	15	5	8	1.28
761048--761140	30	3.0	30	75	15	82	65	22	5	6	1.37
761061--761139	22	3.9	21	77	15	76	67	22	5	5	1.31
761670--761929	20	14.2	18	66	22	73	33	1	3	61	1.23
761670--761938	9	28.4	9	70	16	129	33	1	3	61	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
761678--761880	10	20.9	10	69	18	76	33	1	3	61	1.22
761900--761938	17	2.3	17	86	8	53	35	0	0	64	0.94
762853--763417	28	19.9	29	78	5	431	22	15	10	51	1.74
762853--763408	57	9.8	57	81	3	541	22	15	11	51	1.75
764426--764516	32	2.9	31	85	1	119	51	23	3	21	1.62
767306--767436	36	3.6	38	77	10	137	47	12	14	25	1.80
770831--770872	22	2.0	22	85	4	59	42	11	21	23	1.86
776229--776261	17	1.9	17	93	0	57	24	12	15	48	1.78
777738--777805	25	2.7	25	100	0	136	29	23	19	27	1.98
778479--778523	23	2.0	23	90	0	72	28	2	24	44	1.66

Tables:   1   2   3