genome.fa.s15090.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015090.1 Kokia drynarioides strain JFW-HI SEQ_130134, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  762378

Tables:   1   2   3   

This is table  2  of  3  ( 280 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
347885--347927	17	2.5	18	81	11	54	20	13	11	53	1.71
348526--348555	15	2.0	15	93	0	51	76	0	16	6	0.99
356545--356584	19	2.0	20	85	4	55	40	0	2	57	1.12
356658--356702	20	2.3	20	85	11	58	33	0	2	64	1.06
356658--356707	19	2.6	19	84	9	57	34	0	2	64	1.05
359681--359727	21	2.2	21	100	0	94	38	27	10	23	1.88
360182--360242	24	2.5	24	81	0	77	52	11	9	26	1.68
361642--361678	2	18.5	2	100	0	74	48	0	51	0	1.00
385212--385257	21	2.2	21	96	0	83	28	0	15	56	1.39
385221--385267	21	2.2	21	84	0	58	29	0	17	53	1.44
385677--385716	19	2.1	19	95	0	71	37	5	15	42	1.68
386639--386742	43	2.4	43	91	1	165	29	10	12	47	1.75
387562--387616	28	2.0	28	88	0	83	20	1	27	50	1.58
387561--387716	14	11.0	14	70	8	75	26	1	26	44	1.64
387561--387701	21	6.6	21	67	13	65	24	2	26	46	1.64
389540--389612	31	2.4	31	97	2	139	49	8	13	28	1.71
403329--403369	20	2.0	20	90	9	66	60	0	2	36	1.10
403332--403375	19	2.2	20	84	11	56	59	2	2	36	1.23
403609--403684	27	2.8	27	69	11	66	22	31	23	22	1.98
403823--403866	3	14.7	3	100	0	88	65	0	0	34	0.93
404040--404073	12	2.8	12	86	0	50	14	2	11	70	1.27
410928--411338	195	2.1	196	82	6	478	26	24	19	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
415366--415414	14	3.5	14	72	10	55	51	8	0	40	1.32
416640--416678	16	2.5	16	83	4	53	43	10	10	35	1.73
418755--418919	37	4.5	37	84	4	181	37	30	20	11	1.88
418849--419034	58	3.2	58	84	4	234	43	30	16	10	1.81
418886--418998	21	5.6	21	75	14	94	45	30	15	8	1.77
418791--419053	95	2.8	94	77	9	284	41	31	17	10	1.83
418966--419053	37	2.4	37	83	7	124	40	30	17	11	1.84
424458--424520	21	3.2	21	64	35	59	34	34	22	7	1.83
424583--424682	16	5.6	16	66	25	58	41	29	19	11	1.85
424394--424724	37	8.9	37	85	2	371	39	29	17	12	1.87
425426--425466	21	2.0	21	100	0	82	29	31	14	24	1.95
426378--426476	43	2.3	43	84	3	119	20	16	20	43	1.88
427843--427883	18	2.3	18	87	4	57	24	0	4	70	1.06
431930--431957	3	9.3	3	100	0	56	67	0	0	32	0.91
433712--435279	38	39.9	41	69	16	493	26	17	22	33	1.96
433712--434678	78	12.3	78	84	2	1120	27	17	22	32	1.97
433802--435012	78	15.5	78	80	7	1046	26	17	22	33	1.96
433787--435213	156	9.1	152	79	9	498	26	16	23	33	1.96
433852--434795	466	2.0	465	85	4	1267	26	17	22	33	1.96
434667--435241	242	2.4	242	83	5	701	25	16	23	34	1.95
434693--435291	320	1.9	320	86	3	866	25	16	24	34	1.95
434667--435291	156	4.0	156	84	5	783	25	16	24	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
434668--435291	78	7.9	77	81	9	600	25	16	24	34	1.95
436431--436470	16	2.6	16	88	4	55	0	17	0	82	0.67
436431--436490	26	2.3	26	88	5	86	1	18	0	80	0.80
437335--437367	14	2.3	15	89	5	50	0	24	0	75	0.80
439590--439744	37	4.2	37	89	1	222	35	32	19	12	1.90
439717--439765	21	2.3	21	100	0	98	46	32	14	6	1.69
439676--439802	58	2.2	58	84	0	164	41	31	16	10	1.82
439644--439839	95	2.1	95	89	1	295	40	30	17	10	1.84
439738--439894	37	4.2	37	82	0	188	42	28	18	10	1.84
439738--439889	74	2.1	74	87	2	216	42	28	18	10	1.83
439616--439876	132	2.0	132	85	1	353	39	31	18	10	1.85
441466--441493	3	9.3	3	100	0	56	67	0	0	32	0.91
443250--443427	81	2.2	81	84	7	229	20	17	34	28	1.95
445013--445079	31	2.2	31	83	5	82	23	22	19	34	1.97
445195--445303	56	1.9	56	81	3	130	38	10	23	27	1.87
451340--451370	3	10.3	3	92	0	53	29	67	0	3	1.06
453762--453795	17	1.9	18	88	5	52	50	0	0	50	1.00
455375--455422	13	4.4	11	78	19	55	50	0	0	50	1.00
456085--456135	26	2.0	26	92	0	84	64	11	5	17	1.45
457011--457241	118	2.0	118	98	0	444	32	21	14	31	1.93
460395--460674	153	1.8	153	82	1	355	27	23	23	25	2.00
461647--461769	61	2.0	61	98	0	237	30	6	15	47	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
462194--462233	12	3.2	12	92	3	62	75	2	10	12	1.15
464976--465013	16	2.2	19	86	13	55	18	10	5	65	1.41
465650--465680	15	2.1	15	93	0	53	38	3	6	51	1.44
466183--466228	24	1.9	24	82	8	58	60	8	2	28	1.38
471187--471256	20	3.5	20	72	3	70	40	0	2	57	1.14
471240--471273	16	2.1	17	88	5	52	47	0	0	52	1.00
472499--472551	25	2.3	23	76	20	56	33	0	0	66	0.92
474058--474126	22	3.3	21	78	8	77	10	8	14	66	1.44
474129--474224	12	8.3	12	75	11	67	8	4	19	67	1.33
474109--474225	56	2.1	56	83	3	146	6	5	21	66	1.35
474135--474225	44	2.1	44	85	4	121	7	4	19	68	1.32
474354--474427	26	2.7	27	81	8	78	32	0	4	63	1.13
474357--474427	37	1.9	37	85	5	99	33	0	4	61	1.15
475696--475721	11	2.4	11	100	0	52	34	0	0	65	0.93
477493--477538	23	2.0	23	91	0	74	39	13	13	34	1.83
477742--477874	58	2.3	58	82	2	178	48	17	1	33	1.56
477819--477902	42	2.0	42	90	0	132	48	15	0	35	1.45
485484--485530	21	2.2	21	88	0	67	42	14	19	23	1.88
486878--486914	12	3.0	13	76	15	51	75	0	8	16	1.02
491038--491081	22	2.0	23	86	13	65	40	15	9	34	1.79
496618--496670	25	2.1	25	86	6	72	56	1	0	41	1.10
504587--504626	21	2.0	21	85	5	55	65	12	7	15	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
506689--506720	12	2.7	12	100	0	64	15	50	15	18	1.79
507219--507263	18	2.5	18	89	7	65	44	11	31	13	1.78
514045--514096	24	2.2	24	86	3	70	76	0	13	9	1.01
520659--520701	20	2.2	20	87	4	61	37	0	4	58	1.19
527782--527829	17	2.8	17	80	0	51	43	4	2	50	1.33
533526--533573	17	2.8	17	80	0	51	43	4	2	50	1.33
535078--535440	29	12.3	28	76	8	230	35	30	3	30	1.73
535078--535435	59	6.1	59	90	0	536	35	31	2	30	1.72
547330--547477	37	3.7	37	69	22	118	31	17	25	25	1.97
547323--547535	86	2.5	86	92	0	336	32	17	25	24	1.96
547409--548467	206	5.1	206	91	0	1636	35	19	22	22	1.96
548736--548779	6	7.8	6	76	23	51	47	0	0	52	1.00
548740--548790	10	4.7	10	80	17	57	47	1	0	50	1.12
548704--548790	17	5.2	17	75	5	61	45	3	1	49	1.26
548791--548824	15	2.3	15	90	5	52	50	17	11	20	1.77
550284--550461	29	6.1	29	83	7	216	33	32	4	29	1.78
550278--550461	59	3.1	59	92	0	305	33	33	4	28	1.77
550283--550500	118	1.8	118	85	3	305	33	32	4	29	1.78
552155--552218	24	2.7	24	82	4	85	26	12	4	56	1.56
552869--552922	19	2.9	18	83	10	65	59	0	1	38	1.08
556644--556674	11	2.8	11	100	0	62	16	16	48	19	1.81
557828--557871	16	2.8	16	96	3	81	59	40	0	0	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
562354--562404	21	2.4	21	83	0	66	39	25	13	21	1.90
563073--563166	35	2.6	36	82	11	113	21	26	12	39	1.89
583226--583265	21	1.9	21	85	10	55	45	5	32	17	1.70
588116--588311	96	2.0	96	100	0	392	36	15	17	30	1.91
591712--591777	27	2.5	28	78	9	75	50	4	1	43	1.32
595526--595564	19	2.1	19	90	0	60	48	0	17	33	1.48
596800--596859	32	1.9	32	86	3	86	46	8	8	36	1.64
606150--606182	14	2.4	14	90	5	50	18	6	12	63	1.48
613170--613205	13	2.6	14	91	8	56	55	2	2	38	1.29
615237--615272	16	2.2	16	95	0	63	25	13	38	22	1.91

Tables:   1   2   3