genome.fa.s15091.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015091.1 Kokia drynarioides strain JFW-HI SEQ_130135, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  803680

Tables:   1   2   3   

This is table  2  of  3  ( 318 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
322019--322056	20	1.9	20	89	10	60	31	26	5	36	1.79
322942--322998	29	2.0	29	82	0	69	49	8	14	28	1.72
323909--323947	18	2.1	19	90	4	62	56	2	0	41	1.13
345727--345784	29	2.0	29	89	0	89	31	6	12	50	1.66
347246--347283	17	2.1	19	85	9	53	65	0	2	31	1.06
348649--348679	14	2.2	14	94	0	53	83	0	16	0	0.64
356729--356758	15	1.9	16	93	6	53	6	30	0	63	1.20
361114--361162	19	2.6	18	78	12	53	34	0	4	61	1.15
362669--362751	43	1.9	43	100	0	166	24	15	26	33	1.95
366390--366452	24	2.6	24	82	0	81	26	12	9	50	1.71
367761--367826	33	2.0	33	100	0	132	33	6	9	51	1.58
370939--370971	16	1.9	18	88	11	52	66	0	9	24	1.20
371362--371444	40	2.1	40	88	0	121	66	10	3	19	1.37
371657--371756	45	2.2	45	79	12	107	56	29	6	9	1.54
371657--371756	22	4.4	23	82	3	96	56	29	6	9	1.54
371638--371756	22	5.3	23	74	13	79	57	25	6	10	1.57
372767--372802	18	2.0	18	88	0	54	58	2	0	38	1.13
393991--394022	3	10.7	3	100	0	64	31	0	0	68	0.90
398311--398349	17	2.3	17	86	8	53	74	5	0	20	1.01
406008--406034	11	2.5	11	100	0	54	40	0	0	59	0.98
407548--407925	30	12.7	30	71	17	159	38	2	25	33	1.69
407486--407925	30	14.8	29	71	13	123	38	2	25	33	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
407554--407925	58	6.3	59	83	6	425	38	2	25	33	1.69
407576--407915	180	1.9	180	87	4	499	40	1	24	33	1.66
407578--407924	60	5.9	56	79	9	205	39	1	25	34	1.66
410061--410145	11	8.0	11	70	13	54	55	4	1	38	1.29
410068--410146	17	4.6	17	79	6	97	54	5	1	39	1.30
410062--410146	6	14.8	6	69	14	63	54	4	1	40	1.29
410496--410971	209	2.3	209	86	1	677	22	24	17	35	1.95
411459--411484	5	5.2	5	100	0	52	38	19	19	23	1.93
412035--412212	58	3.1	58	95	0	311	31	0	19	49	1.48
412428--412453	9	2.9	9	100	0	52	42	23	11	23	1.86
413585--413633	24	2.0	24	100	0	98	20	4	36	38	1.72
424046--424133	29	3.0	30	70	18	85	38	2	23	35	1.68
429374--430145	49	15.8	49	72	10	379	38	17	24	19	1.92
429419--430146	98	7.4	98	79	3	619	39	17	23	20	1.92
429517--430124	196	3.1	196	81	2	736	39	16	23	20	1.92
429419--430074	147	4.5	147	76	7	503	39	16	24	19	1.92
429517--430145	147	4.3	147	76	6	524	39	16	23	20	1.92
429566--430163	98	6.1	98	81	2	635	39	17	23	19	1.92
430471--430614	42	3.4	42	81	1	173	31	29	10	29	1.90
434874--435000	61	2.1	61	82	5	150	27	22	20	29	1.98
437283--437345	19	3.4	18	79	12	65	66	3	1	28	1.16
437305--437347	10	4.4	9	78	16	50	74	0	2	23	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
437938--437967	2	15.0	2	100	0	60	0	0	50	50	1.00
441368--441398	2	15.5	2	100	0	62	48	0	0	51	1.00
441676--441783	41	2.6	41	80	0	135	27	2	24	45	1.67
442858--442912	18	2.8	20	81	15	62	34	0	1	63	1.05
445168--445192	3	8.3	3	100	0	50	0	0	32	68	0.90
464063--464106	21	2.1	21	100	0	88	34	31	4	29	1.78
469634--469698	22	2.9	23	77	9	62	33	26	12	27	1.92
470477--470508	16	2.0	16	93	0	55	25	12	3	59	1.48
480423--480543	57	2.1	57	93	0	206	30	4	12	52	1.57
481524--481584	6	10.0	6	75	20	56	16	1	3	78	0.96
482960--483039	43	2.0	41	82	9	101	58	2	13	25	1.48
483347--483468	29	4.2	28	67	19	79	36	4	24	34	1.75
484270--484316	4	11.8	4	86	0	58	40	2	6	51	1.39
485784--485816	2	16.5	2	100	0	66	51	0	48	0	1.00
488965--489017	15	3.3	15	73	19	52	43	0	1	54	1.11
489051--489090	14	2.8	15	78	21	50	47	0	0	52	1.00
489049--489092	13	3.3	14	84	9	56	50	0	0	50	1.00
489092--489208	53	2.2	53	90	1	182	54	1	6	36	1.37
489152--489178	14	1.9	14	100	0	54	62	0	0	37	0.95
491374--491412	3	13.0	3	100	0	78	66	0	0	33	0.92
493392--493435	18	2.4	18	85	7	54	47	0	2	50	1.13
494596--494727	67	2.0	67	85	5	178	34	15	12	36	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
494651--494878	82	2.8	82	82	1	287	34	14	14	36	1.87
495012--495134	58	2.1	58	83	3	149	40	2	10	46	1.52
495452--495526	39	1.9	39	86	0	105	38	5	10	45	1.62
495516--495587	36	2.0	36	97	0	135	43	13	15	27	1.85
496542--496572	16	1.9	16	93	0	53	22	3	6	67	1.28
497092--497167	27	2.7	27	73	6	71	17	38	10	34	1.84
499548--499603	27	2.1	26	83	3	67	19	33	12	33	1.89
504846--504887	21	2.0	21	90	0	66	40	11	26	21	1.88
509771--509828	24	2.4	24	97	0	107	20	24	27	27	1.99
511933--511967	16	2.2	16	89	0	52	68	2	11	17	1.31
514731--514800	25	2.8	26	81	10	76	45	0	0	54	0.99
519589--519650	21	3.0	21	77	13	65	64	0	0	35	0.94
519960--520010	20	2.5	21	75	12	52	54	1	3	39	1.30
521383--521433	26	2.0	26	88	7	77	50	1	0	47	1.12
522287--522381	29	3.2	28	86	7	109	52	1	1	45	1.14
525269--525326	26	2.2	25	85	11	73	65	1	0	32	1.03
525294--525341	16	3.1	15	77	11	53	58	0	0	41	0.98
528985--529018	18	1.9	18	88	5	52	52	8	0	38	1.33
530788--530964	59	3.0	56	80	11	178	31	16	17	34	1.92
530944--531153	62	3.4	62	87	5	278	37	14	17	30	1.90
530945--531200	126	2.0	124	83	8	315	37	16	18	27	1.92
530946--531281	62	5.5	60	78	10	254	36	15	17	30	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
531195--531365	84	2.0	83	89	3	263	39	12	12	35	1.81
531277--531451	58	3.0	55	79	9	181	40	14	15	29	1.87
531288--531451	59	2.8	59	82	9	178	38	14	15	31	1.88
533513--533586	27	2.8	26	81	6	94	29	2	1	66	1.14
535999--536439	220	2.0	220	92	1	733	35	13	12	38	1.82
545027--545083	22	2.6	22	82	0	69	21	0	10	68	1.19
545046--545088	14	3.1	14	80	3	52	23	0	6	69	1.12
545424--545501	32	2.5	32	83	6	88	28	19	8	43	1.81
545452--545528	31	2.5	32	85	8	97	29	18	6	45	1.74
547358--547407	23	2.1	24	82	10	59	52	8	10	30	1.64
558400--558431	12	2.8	11	90	9	55	28	0	0	71	0.86
558430--558478	16	3.1	16	80	16	57	73	4	0	22	1.00
559317--559502	30	6.3	30	74	7	137	38	20	5	35	1.76
559331--559457	29	4.4	28	76	8	112	42	19	3	34	1.67
559327--559491	59	2.8	60	81	9	176	40	20	4	34	1.72
559520--559578	26	2.2	27	81	3	66	23	3	8	64	1.37
560836--560881	21	2.2	21	84	0	56	36	4	10	47	1.58
565489--565517	14	2.1	14	93	6	51	51	0	3	44	1.18
566946--567077	65	2.0	65	94	0	228	41	8	10	39	1.70
566964--567076	32	3.5	31	66	16	77	41	7	9	41	1.65
585771--585892	23	5.2	23	86	5	138	11	20	22	45	1.82
585790--585939	69	2.1	69	84	11	191	12	21	20	46	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
586763--586826	15	4.2	15	82	9	76	65	1	3	29	1.17
586893--586926	12	2.8	12	90	0	50	32	2	8	55	1.45
595025--595725	38	18.4	38	77	1	598	37	27	18	16	1.92
594992--595725	76	9.7	76	81	3	690	37	27	17	16	1.92
594992--595723	152	4.8	152	81	2	772	37	27	17	16	1.92
611237--611279	22	1.9	23	90	4	70	37	25	30	6	1.82
611255--611697	41	10.8	41	84	1	530	30	19	30	19	1.97
616887--616915	14	2.1	14	93	6	51	34	0	10	55	1.34
617701--618141	43	10.3	43	81	6	427	24	18	27	28	1.98
617767--618127	171	2.1	172	88	3	532	24	19	27	28	1.98

Tables:   1   2   3