genome.fa.s15091.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015091.1 Kokia drynarioides strain JFW-HI SEQ_130135, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  803680

Tables:   1   2   3   

This is table  3  of  3  ( 318 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
619024--619084	29	2.1	29	87	6	88	29	0	14	55	1.40
624604--624652	21	2.3	22	75	10	57	48	0	0	51	1.00
627918--627950	9	3.7	9	84	15	50	48	0	0	51	1.00
629929--630001	31	2.4	31	81	2	94	30	19	8	42	1.80
630208--630311	28	3.5	27	74	17	91	49	10	15	25	1.76
636306--636346	21	2.0	21	85	9	57	46	24	4	24	1.72
638183--638233	24	2.2	24	80	10	63	45	1	7	45	1.44
645651--645711	29	2.1	29	87	3	86	49	1	1	47	1.21
650462--650514	18	2.9	19	73	15	58	30	1	3	64	1.22
650462--650513	19	2.8	18	77	8	52	30	1	3	63	1.23
651105--651151	22	2.2	21	84	3	58	44	4	2	48	1.34
663317--663345	13	2.3	13	94	5	51	55	0	6	37	1.27
666267--666623	148	2.4	147	93	1	601	28	9	22	39	1.85
668295--668582	142	2.0	140	92	4	472	34	10	22	32	1.89
673258--673282	2	12.5	2	100	0	50	52	0	0	48	1.00
678653--678712	11	5.9	11	73	25	60	48	0	1	50	1.11
678662--678730	31	2.3	31	92	7	117	50	0	0	49	1.00
678865--678939	9	8.9	9	73	22	65	45	0	1	53	1.08
678895--678937	22	2.0	22	90	4	70	51	0	0	48	1.00
681686--681716	10	3.0	10	95	4	53	38	0	0	61	0.96
682240--682446	101	2.0	101	97	0	387	42	10	10	36	1.73
692421--692470	23	2.3	22	80	16	59	50	10	2	38	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
692801--692845	19	2.3	19	85	11	56	64	0	0	35	0.94
694043--694102	15	3.9	15	77	10	59	40	10	1	48	1.47
694048--694112	32	2.0	32	93	0	112	38	10	1	49	1.47
694046--694133	15	5.7	15	72	17	56	35	11	2	51	1.51
694056--694134	15	5.0	16	72	18	67	34	12	2	50	1.54
694355--694435	30	2.8	28	80	10	74	60	3	2	33	1.27
694372--694434	29	2.2	28	82	5	72	66	4	3	25	1.26
695074--695141	31	2.2	31	83	0	82	44	10	11	33	1.75
699793--699824	16	1.9	17	93	6	57	31	6	6	56	1.49
704424--704469	23	2.0	23	95	0	83	19	23	4	52	1.64
708729--708787	30	2.0	30	90	3	93	59	13	3	23	1.50
714423--714486	18	3.6	17	74	12	58	40	3	1	54	1.25
714458--714499	18	2.3	19	84	8	52	42	2	0	54	1.13
714453--714499	18	2.6	18	83	6	51	42	2	2	53	1.25
714495--714567	20	3.7	19	84	15	87	34	0	8	57	1.28
725072--725143	29	2.6	28	80	6	83	31	6	29	31	1.84
725177--725559	60	6.5	59	78	8	352	39	4	24	31	1.74
725225--725489	28	9.1	29	65	12	123	38	4	24	32	1.74
725197--725560	58	6.2	58	79	8	346	40	4	23	32	1.73
725215--725561	116	3.0	114	82	7	396	40	4	22	32	1.73
725530--725616	30	3.0	29	73	10	79	47	0	18	34	1.49
725568--725633	30	2.2	29	86	5	87	46	1	19	31	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
725196--725616	58	7.2	59	78	9	195	41	3	22	32	1.71
725575--725641	30	2.2	30	89	5	100	41	1	17	38	1.59
727468--727568	17	5.9	17	72	9	62	54	6	4	33	1.49
731358--731382	13	1.9	13	100	0	50	40	4	8	48	1.51
731635--731926	52	5.6	52	81	4	286	27	10	21	40	1.86
731652--731904	103	2.4	102	84	4	310	28	10	21	40	1.86
731652--731926	104	2.7	102	83	4	318	27	10	21	40	1.86
732388--732572	96	1.9	96	85	4	257	36	12	19	31	1.89
732914--733096	59	3.1	58	88	3	258	33	5	28	32	1.80
732914--733096	29	6.2	29	82	9	210	33	5	28	32	1.80
734806--734831	13	2.0	13	100	0	52	23	7	23	46	1.78
734835--734883	23	2.1	25	85	14	77	51	2	0	46	1.12
734849--734929	17	4.8	17	87	3	110	51	4	0	43	1.23
734841--734900	23	2.6	23	84	7	68	53	3	0	43	1.17
734843--734929	6	15.2	6	70	21	62	51	4	0	43	1.22
734837--734893	10	5.7	10	73	22	57	52	1	0	45	1.11
736564--736598	16	2.2	16	90	5	54	68	0	2	28	1.04
741292--741332	17	2.4	17	87	4	55	48	2	26	21	1.63
742127--742171	15	2.9	15	81	12	56	26	22	4	46	1.70
750429--750566	68	2.0	68	97	0	258	44	8	15	31	1.77
753361--753430	28	2.5	28	100	0	140	30	8	0	61	1.26
756238--756262	13	1.9	13	100	0	50	28	0	0	72	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
770638--770668	16	1.9	16	93	0	53	6	3	41	48	1.45
772513--772694	30	6.1	29	77	7	143	30	6	29	33	1.82
772507--772685	60	3.0	58	83	1	232	31	5	28	34	1.80
774285--774332	17	2.8	17	93	0	78	56	2	2	39	1.23
774743--775242	209	2.4	208	89	1	748	25	20	16	37	1.93
783253--783305	24	2.2	24	82	0	61	9	18	18	52	1.72
787116--787234	60	2.0	60	88	0	175	33	8	26	31	1.86
787112--787220	30	3.6	30	79	4	130	31	8	26	33	1.86
787112--787234	30	4.1	31	75	6	119	32	8	27	31	1.86
801230--801260	4	8.0	4	92	7	55	48	0	0	51	1.00
801222--801265	11	3.8	11	88	8	61	43	0	0	56	0.99
801577--801603	12	2.2	12	100	0	54	59	0	0	40	0.98

Tables:   1   2   3

The End!