genome.fa.s15102.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015102.1 Kokia drynarioides strain JFW-HI SEQ_130146, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  783730

Tables:   1   2   3   

This is table  1  of  3  ( 262 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1531--1590	23	2.6	23	81	5	68	43	18	6	31	1.76
5517--5573	23	2.5	23	76	23	59	40	0	7	52	1.28
6848--6932	28	3.1	26	72	19	66	69	3	3	23	1.20
9273--9329	20	2.8	19	74	10	51	40	10	10	38	1.74
9783--9816	5	6.8	5	100	0	68	58	0	41	0	0.98
19272--19298	4	6.8	4	100	0	54	0	25	22	51	1.48
24775--24810	16	2.2	16	90	0	54	63	2	0	33	1.08
29470--29512	11	3.7	11	85	11	59	86	0	11	2	0.67
29479--29512	8	4.2	8	85	14	52	88	0	11	0	0.52
29470--29515	19	2.4	19	85	7	58	84	0	13	2	0.71
29476--29509	13	2.8	12	91	8	59	91	0	8	0	0.43
31176--31221	16	2.9	16	87	6	58	50	0	15	34	1.44
31838--31883	22	2.1	22	84	11	60	54	2	0	43	1.12
31971--32006	17	2.2	17	90	5	56	58	8	0	33	1.28
32669--32764	47	2.0	47	86	4	131	63	2	13	20	1.39
43914--43957	17	2.4	17	85	11	52	45	0	0	54	0.99
47467--47656	30	6.4	29	78	5	193	34	27	3	34	1.73
47490--47669	30	6.1	30	79	5	195	35	30	2	32	1.70
47467--47656	59	3.2	59	83	1	247	34	27	3	34	1.73
47496--47678	59	3.1	55	76	17	172	36	28	2	32	1.69
47730--47791	28	2.2	28	80	5	72	32	25	11	30	1.91
48042--48176	72	1.9	72	87	3	200	31	20	14	34	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48857--48905	23	2.1	24	85	11	66	34	6	4	55	1.44
57458--57502	21	2.3	20	85	11	58	8	35	0	55	1.31
58522--58547	7	3.7	7	100	0	52	61	23	0	15	1.33
61506--61613	55	2.0	55	94	0	189	25	25	19	29	1.98
65673--65701	3	9.7	3	100	0	58	68	0	0	31	0.89
75818--75947	66	2.0	66	84	6	174	40	16	16	26	1.90
78938--78978	14	2.7	15	88	11	66	90	9	0	0	0.46
78941--78974	10	3.4	10	92	8	52	91	8	0	0	0.43
79096--79141	23	2.0	23	91	4	76	47	8	2	41	1.46
83416--83452	7	5.1	7	90	6	56	86	0	13	0	0.57
83416--83452	15	2.6	14	91	4	56	86	0	13	0	0.57
86407--86470	29	2.2	29	77	0	74	51	14	12	21	1.75
89428--89548	27	4.4	27	82	9	129	31	19	6	42	1.76
89428--89545	55	2.1	55	83	10	143	30	19	6	43	1.77
96413--96445	17	1.9	17	88	11	50	60	0	0	39	0.97
98196--98269	20	3.7	20	78	18	73	5	9	16	68	1.35
98284--98361	12	6.8	12	72	11	56	6	6	19	67	1.34
98273--98374	35	3.0	33	80	10	89	7	6	18	66	1.39
98284--98393	44	2.5	44	83	4	123	8	4	19	68	1.33
98316--98379	12	5.4	12	79	3	58	7	3	18	70	1.25
101105--101282	74	2.4	74	84	0	239	26	24	22	26	2.00
101139--101294	75	2.1	74	85	2	206	27	23	22	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101772--101925	77	2.0	77	98	0	299	25	19	20	35	1.96
106038--106102	29	2.2	31	83	10	82	18	10	4	66	1.40
132713--132756	22	2.0	22	86	8	63	36	15	6	40	1.74
133355--133402	21	2.2	21	82	10	53	81	0	14	4	0.84
149940--149996	29	2.0	29	86	6	80	29	1	24	43	1.64
150039--150111	30	2.4	30	97	0	137	39	2	23	34	1.69
150969--150995	2	13.5	2	100	0	54	0	0	48	51	1.00
152011--153073	81	13.0	81	81	6	956	25	17	26	30	1.97
152012--153072	42	25.9	42	78	9	994	25	17	26	30	1.97
152037--153072	123	8.5	122	79	10	913	25	17	26	30	1.97
152037--152899	249	3.5	248	85	4	1104	26	17	26	29	1.97
153306--153826	49	10.7	49	75	2	357	23	27	13	35	1.93
153306--153785	98	4.9	98	85	2	572	22	28	14	34	1.93
153324--153825	147	3.4	147	74	6	397	23	27	13	35	1.92
153306--153824	196	2.7	196	84	1	655	23	27	13	35	1.93
154221--154423	102	2.0	105	87	2	295	39	11	21	28	1.87
154326--154535	112	1.9	112	86	0	303	38	9	20	31	1.84
154851--154919	9	7.7	9	78	10	70	0	18	0	81	0.70
154858--154917	5	12.4	5	81	15	65	0	18	0	81	0.69
159924--160060	59	2.3	59	83	6	170	35	3	21	39	1.71
159924--160073	30	5.1	30	78	13	123	36	4	20	38	1.73
160693--160730	20	1.9	20	84	10	51	5	7	5	81	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
161415--161451	19	1.9	19	88	0	56	13	0	8	78	0.96
162369--162566	108	1.8	109	85	3	283	36	23	18	21	1.95
162501--162600	34	2.9	34	89	0	155	37	25	19	19	1.94
164331--164383	21	2.4	21	81	6	61	37	22	9	30	1.86
168150--168247	38	2.5	40	72	11	94	22	19	28	29	1.98
175798--175906	53	2.1	53	100	0	218	26	16	18	38	1.92
177519--177558	20	2.0	20	100	0	80	35	20	20	25	1.96
178438--178476	20	2.0	20	85	10	53	66	10	12	10	1.44
198744--198902	87	1.8	86	89	4	248	36	22	15	25	1.94
200308--200333	13	2.0	13	100	0	52	30	23	7	38	1.83
204223--204330	55	1.9	56	80	10	123	47	12	12	28	1.76
205653--205708	24	2.3	25	85	14	82	23	23	8	44	1.81
209668--209777	24	4.6	24	83	0	112	39	15	21	23	1.92
209668--209777	48	2.3	48	83	0	139	39	15	21	23	1.92
215202--215241	21	2.0	21	85	9	57	50	15	15	20	1.79
215680--215723	12	3.7	12	81	9	54	0	36	0	63	0.95
227600--227649	17	2.9	18	82	11	52	52	0	28	20	1.47
227923--228030	55	2.0	55	90	0	171	27	9	14	48	1.75
229016--229053	20	1.9	20	94	0	67	39	5	0	55	1.23
230797--230837	21	2.0	21	85	0	55	39	0	0	60	0.96
239448--239472	12	2.1	12	100	0	50	8	40	0	52	1.31
241748--241803	17	3.2	17	87	5	85	53	16	5	25	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
242656--242699	22	2.0	22	95	0	79	52	2	9	36	1.46
244349--244415	22	3.0	22	77	0	80	26	22	17	32	1.96
252287--252531	24	10.2	24	81	3	260	33	19	20	26	1.96
252287--252555	72	3.7	72	83	3	308	34	18	20	26	1.96
254124--254368	53	4.6	54	91	2	397	25	14	22	36	1.93
255043--255089	21	2.2	21	88	0	67	19	19	25	36	1.95
258633--258689	27	2.1	27	83	0	69	26	22	26	24	2.00
260450--260494	6	7.5	6	87	0	63	4	35	11	48	1.59
260950--261049	43	2.3	43	86	6	148	43	13	11	33	1.78
262120--262161	20	2.1	20	82	8	50	50	9	7	33	1.62
263210--263239	15	2.0	15	100	0	60	13	46	6	33	1.69
263463--263508	22	2.1	22	84	4	58	45	2	26	26	1.65
263852--263903	23	2.3	22	77	12	52	71	9	0	19	1.13
263970--264342	164	2.4	151	77	12	356	51	14	1	32	1.49
263914--264342	158	2.7	152	75	14	384	48	15	1	35	1.53
264807--264843	19	1.9	19	88	0	56	70	2	0	27	1.01
274552--274662	54	2.1	54	100	0	222	16	12	24	46	1.81
286811--286885	37	2.0	37	92	0	123	37	16	26	20	1.93
290007--290047	19	2.2	18	86	4	55	14	17	9	58	1.62
292461--292491	16	1.9	16	93	0	53	35	35	0	29	1.58
297293--297941	39	16.5	38	74	6	422	24	16	29	29	1.97
297293--297944	79	8.3	79	79	1	603	24	16	29	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
298022--298155	49	2.7	49	73	4	135	17	27	20	34	1.95
298031--298430	50	8.1	50	70	7	185	16	28	18	36	1.93
298029--298403	99	3.8	99	78	3	319	16	28	18	36	1.93
298327--298464	50	2.8	50	82	2	152	14	34	16	34	1.89
302896--302946	25	2.0	26	85	14	70	39	11	13	35	1.82
303548--303620	22	3.3	22	65	24	62	50	16	15	17	1.78
303537--303627	45	2.0	45	100	0	182	51	15	13	19	1.76
303538--303609	23	3.2	23	61	11	58	52	15	12	19	1.74
304834--304968	68	2.1	65	81	13	156	49	5	10	34	1.61
317145--317514	109	3.4	108	84	2	429	31	23	17	27	1.97

Tables:   1   2   3