genome.fa.s15102.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015102.1 Kokia drynarioides strain JFW-HI SEQ_130146, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  783730

Tables:   1   2   3   

This is table  2  of  3  ( 262 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
317128--317531	215	1.9	217	83	3	526	30	23	17	27	1.97
318468--318513	3	15.3	3	95	0	83	63	0	0	36	0.95
323712--323759	21	2.3	21	85	0	60	33	27	14	25	1.94
324356--324450	41	2.3	41	85	0	118	28	23	7	41	1.81
324430--324621	42	4.5	43	75	7	140	31	23	8	36	1.85
324430--324602	85	2.0	86	82	5	208	31	24	8	35	1.86
328436--328794	122	2.9	123	92	0	603	37	10	9	41	1.73
330865--330920	21	2.7	21	75	13	62	28	26	10	33	1.90
337621--337645	12	2.1	12	100	0	50	40	16	8	36	1.77
344120--344158	15	2.6	15	83	0	51	23	28	23	25	1.99
347395--347424	6	4.8	6	92	8	51	33	0	0	66	0.92
347382--347424	13	3.4	13	87	9	54	34	2	2	60	1.22
351091--351134	17	2.6	17	85	0	61	25	13	6	54	1.63
351103--351139	17	2.2	17	90	0	56	21	18	8	51	1.72
362629--362717	17	5.2	17	75	0	88	22	21	11	44	1.83
362629--362718	34	2.6	34	96	0	162	22	21	11	45	1.82
363171--363215	19	2.5	17	82	13	54	20	0	2	77	0.87
363272--363324	24	2.3	22	84	12	70	49	33	3	13	1.60
363545--363586	11	3.9	10	90	6	57	66	11	9	11	1.44
363545--363586	21	1.9	21	90	9	66	66	11	9	11	1.44
376450--376586	39	3.5	39	72	6	123	29	23	16	30	1.96
376457--376975	79	6.6	79	81	1	592	31	25	17	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
376483--376973	237	2.1	238	86	1	700	31	25	17	25	1.97
377548--377600	24	2.3	22	84	12	70	49	37	5	7	1.55
378901--378947	22	2.1	22	88	0	67	34	2	6	57	1.36
386306--386399	49	1.9	49	88	0	143	45	15	10	27	1.80
411635--411728	31	3.0	31	92	0	161	31	14	13	39	1.86
411870--412016	79	1.9	78	87	4	215	42	7	11	38	1.70
412411--412444	14	2.4	14	90	9	52	61	5	14	17	1.52
412565--412611	15	3.2	15	84	3	69	48	8	0	42	1.33
416422--416450	12	2.4	12	100	0	58	17	6	13	62	1.52
420464--420501	20	1.9	20	88	0	58	15	26	2	55	1.54
422054--422091	17	2.2	18	95	4	69	5	10	10	73	1.23
430030--430085	29	1.9	29	96	0	103	30	25	14	30	1.95
430187--430211	13	1.9	13	100	0	50	24	44	0	32	1.54
432231--432446	74	2.9	74	84	2	263	35	19	18	26	1.95
432307--432510	39	5.4	39	70	17	146	35	20	20	23	1.96
432346--432585	74	3.2	74	82	5	263	37	20	20	22	1.95
432454--432579	39	3.3	39	70	21	113	38	19	21	19	1.93
432380--432608	74	3.1	75	82	5	209	35	20	22	21	1.96
434528--434599	30	2.4	31	81	6	85	50	19	12	18	1.78
435911--435935	12	2.1	12	100	0	50	44	32	8	16	1.76
435778--436089	166	1.9	166	100	0	624	39	15	6	38	1.74
441479--441517	15	2.6	16	88	8	55	10	12	0	76	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
441482--441517	16	2.2	16	90	9	56	11	13	0	75	1.06
442456--442533	6	12.8	6	83	5	59	70	1	10	17	1.22
442450--442498	17	2.8	17	81	6	53	71	2	6	20	1.18
442465--442530	6	10.8	6	85	7	80	69	1	12	16	1.25
446280--446335	28	2.0	28	92	0	94	32	16	30	21	1.95
447051--447103	21	2.6	21	78	3	54	28	9	28	33	1.88
448779--448810	12	2.4	14	90	10	50	71	0	0	28	0.86
451245--451290	24	1.9	23	86	8	65	56	6	4	32	1.45
455278--455323	22	2.0	23	84	12	60	47	0	32	19	1.50
457537--457656	62	2.0	59	86	4	168	44	2	3	50	1.32
459730--459789	24	2.6	23	86	2	84	30	13	15	41	1.85
461374--461426	21	2.5	21	81	9	63	49	16	0	33	1.47
461593--461676	38	2.2	38	89	0	132	40	3	2	53	1.31
461612--461671	19	3.2	19	68	0	57	38	1	1	58	1.18
465361--465429	34	2.0	34	100	0	138	50	14	5	28	1.66
466518--466542	12	2.1	12	100	0	50	28	0	16	56	1.41
478397--478430	7	5.0	7	89	3	52	67	14	17	0	1.23
483156--483185	7	4.3	7	95	0	51	13	3	43	40	1.60
489207--489245	18	2.2	18	86	4	53	15	12	10	61	1.56
489829--489877	12	4.3	11	80	14	55	79	0	18	2	0.83
489828--489876	24	2.0	25	84	11	66	77	0	20	2	0.87
489830--489879	15	3.1	16	80	13	50	78	0	20	2	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
502866--503045	60	3.0	60	95	0	333	38	10	19	32	1.85
516182--516209	3	9.3	3	100	0	56	64	0	0	35	0.94
522556--522613	27	2.1	27	83	0	71	10	6	37	44	1.65
525113--525193	39	2.1	39	100	0	162	40	12	4	41	1.64
527931--527961	16	1.9	16	93	0	53	41	0	22	35	1.54
528903--528942	19	2.1	19	100	0	80	37	0	20	42	1.52
529535--530386	425	2.0	425	97	0	1616	34	9	17	39	1.81
531654--531717	24	2.7	24	76	9	67	28	20	23	28	1.99
536659--536712	24	2.3	23	84	12	74	53	9	12	24	1.68
541094--541149	25	2.2	25	78	6	60	73	7	7	12	1.25
546984--547030	24	2.0	24	87	8	69	48	10	14	25	1.76
549282--549449	37	4.5	37	82	2	176	30	28	16	24	1.96
549286--549449	74	2.2	74	82	2	195	31	28	15	24	1.96
557506--557746	121	2.0	121	94	0	419	27	13	26	32	1.94
566239--566279	18	2.3	18	87	4	57	19	17	9	53	1.70
566249--566287	18	2.2	18	86	4	53	17	17	10	53	1.71
566873--566897	13	1.9	13	100	0	50	88	0	0	12	0.53
568350--568443	45	2.1	45	93	0	161	34	20	6	39	1.78
579082--579311	105	2.2	105	88	1	336	31	18	26	23	1.98
580050--580097	21	2.3	21	78	7	53	35	10	22	31	1.88
587131--587443	35	8.9	35	77	4	157	26	14	24	34	1.94
587212--587454	70	3.5	69	85	2	306	25	13	25	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
587131--587419	105	2.8	105	80	3	294	27	14	24	33	1.94
587172--587454	35	8.1	35	77	0	253	26	13	25	34	1.93
594393--594455	15	4.2	15	80	8	65	26	22	22	28	1.99
600573--600634	24	2.6	24	94	0	115	27	4	27	40	1.76
606238--606311	37	2.0	36	89	7	114	25	33	5	35	1.79
628701--628794	41	2.3	41	94	0	161	39	25	5	29	1.78
632902--632946	21	2.3	20	82	14	58	55	4	0	40	1.20
632902--632947	20	2.3	20	85	10	60	54	4	0	41	1.20
633823--633847	12	2.1	12	100	0	50	36	8	16	40	1.77
636913--637151	40	6.0	40	84	2	232	30	17	21	30	1.96
636913--637131	120	1.8	120	80	3	262	30	18	21	30	1.97
653219--653262	23	2.0	21	82	8	52	54	11	4	29	1.56
654664--654702	13	3.1	13	81	3	53	10	7	7	74	1.22
654841--654881	18	2.3	18	87	8	57	21	17	46	14	1.84
655553--656026	50	9.6	50	73	10	348	17	29	16	36	1.92
655553--656035	99	4.9	99	80	5	480	17	29	16	36	1.92
655553--656035	149	3.3	149	74	9	380	17	29	16	36	1.92
655553--656031	195	2.4	197	77	8	517	17	29	16	36	1.92
669965--670069	36	2.9	36	82	4	131	37	16	26	20	1.93
673757--673822	24	2.8	24	74	4	62	27	18	21	33	1.96
678248--678352	42	2.5	42	88	0	156	24	19	31	24	1.98
678227--678352	21	6.0	21	79	0	135	25	18	30	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
680861--680886	13	2.0	13	100	0	52	76	0	7	15	0.99
686580--686633	24	2.2	24	83	9	65	44	5	3	46	1.44
686834--686878	19	2.4	19	81	7	56	37	0	2	60	1.09
687685--687735	16	3.3	15	78	10	50	17	7	1	72	1.18
687691--687737	21	2.2	21	88	3	67	17	6	2	74	1.12
691539--691722	89	2.1	88	91	1	305	32	19	27	21	1.97
693427--693486	12	5.0	11	80	13	57	16	3	0	80	0.85
693435--693488	22	2.5	22	80	19	69	18	3	0	77	0.91
693435--693485	21	2.4	21	81	18	61	17	3	0	78	0.90
693814--693852	21	1.9	21	89	5	62	23	5	15	56	1.59

Tables:   1   2   3