genome.fa.s15120.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015120.1 Kokia drynarioides strain JFW-HI SEQ_130164, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  618428

Tables:   1   2   3   

This is table  1  of  3  ( 277 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3554--3709	30	5.3	30	75	9	124	39	24	3	32	1.73
3618--3711	30	3.1	30	86	3	127	37	24	3	35	1.72
5627--5671	17	2.6	18	79	10	58	48	0	0	51	1.00
5963--5999	18	2.0	20	89	10	60	48	2	0	48	1.15
12801--12893	40	2.3	38	77	14	89	19	1	15	64	1.35
12978--13039	29	2.1	29	90	0	97	17	6	24	51	1.69
15149--15190	21	2.0	21	90	0	66	19	4	4	71	1.22
15228--15283	11	5.1	11	75	16	62	14	10	21	53	1.70
15254--15282	12	2.5	12	94	5	51	13	10	24	51	1.72
16650--16718	20	3.3	20	73	11	75	55	30	4	10	1.53
16714--16753	16	2.5	16	91	0	71	50	22	17	10	1.76
17082--17121	9	4.4	9	87	0	62	0	20	0	80	0.72
17087--17118	12	2.7	12	90	0	55	0	21	0	78	0.76
26620--26776	79	2.0	79	97	0	296	43	12	11	32	1.79
28225--28272	20	2.4	20	76	10	53	56	0	0	43	0.99
29576--29601	5	5.2	5	100	0	52	19	0	0	80	0.71
31704--31795	41	2.2	41	92	0	148	47	6	5	40	1.52
42916--42957	17	2.4	18	80	11	52	50	2	0	47	1.14
57671--57712	20	2.1	20	100	0	84	54	11	4	28	1.57
68052--68084	11	3.0	11	95	0	57	27	9	6	57	1.53
68056--68093	11	3.5	11	89	3	51	23	10	2	63	1.39
74538--74572	16	2.2	16	94	0	61	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77331--77365	12	2.8	13	87	12	56	0	37	0	62	0.95
77811--77843	15	2.2	15	100	0	66	33	15	6	45	1.70
82015--82039	9	2.8	9	100	0	50	48	24	28	0	1.52
90636--90706	31	2.3	31	92	4	117	42	15	15	26	1.87
93253--93357	43	2.4	43	79	0	120	40	25	8	24	1.83
94884--94951	10	7.3	10	73	14	56	67	4	0	27	1.09
94983--95024	18	2.4	17	80	7	57	69	0	4	26	1.08
95268--95306	12	3.2	12	78	7	51	74	0	0	25	0.82
95475--95589	10	11.5	10	68	13	58	34	2	1	60	1.20
95479--95574	19	4.9	18	72	18	61	36	2	1	60	1.15
95476--95596	30	4.1	28	72	16	84	33	3	1	61	1.22
104648--104687	18	2.2	18	86	0	53	20	45	2	32	1.64
115979--116018	17	2.4	17	100	0	80	47	12	20	20	1.81
118034--118067	17	2.0	17	94	0	59	32	35	20	11	1.89
118129--118180	19	2.8	18	75	11	52	73	3	7	15	1.21
123711--123780	26	2.7	26	97	0	131	41	18	17	22	1.90
142347--142381	17	2.1	17	88	0	52	51	2	8	37	1.47
144376--144409	7	4.9	7	96	0	59	11	11	0	76	1.02
152854--152906	21	2.6	20	79	5	61	77	13	0	9	0.99
160360--160401	9	4.8	9	88	2	50	52	0	4	42	1.22
162229--162291	23	2.7	23	82	9	74	36	12	9	41	1.76
172869--172909	11	3.4	12	83	10	57	39	0	0	60	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
173504--173708	89	2.3	89	89	3	299	40	8	5	45	1.58
175114--175155	20	2.1	20	100	0	84	33	4	19	42	1.72
180203--180232	15	1.9	16	93	6	53	53	3	0	43	1.17
183202--183253	22	2.3	23	75	18	56	34	13	17	34	1.89
183441--183553	57	2.0	57	100	0	226	46	10	10	32	1.73
192415--192477	32	2.0	32	93	0	108	36	19	12	31	1.89
199101--199171	28	2.5	28	80	8	81	38	0	1	60	1.06
200507--200609	30	3.5	30	69	20	83	37	1	0	60	1.08
213190--213234	21	2.0	22	87	8	65	48	8	4	37	1.55
215627--215657	16	1.9	16	93	0	53	83	0	16	0	0.64
222444--222542	49	2.0	49	96	0	180	37	13	24	25	1.91
228402--228447	22	2.2	21	84	7	58	36	2	4	56	1.31
229904--229950	22	2.1	22	100	0	94	44	12	6	36	1.68
235123--235166	23	2.0	22	90	4	70	25	4	6	63	1.38
236334--236358	2	12.5	2	100	0	50	48	0	0	52	1.00
237025--237062	19	2.1	18	90	5	58	39	0	0	60	0.97
241728--242004	138	2.0	138	85	3	378	26	12	10	50	1.72
242209--242241	16	2.1	16	100	0	66	24	0	0	75	0.80
253483--253508	2	13.0	2	100	0	52	50	0	50	0	1.00
257536--257564	15	1.9	15	100	0	58	27	3	27	41	1.72
260861--260902	22	1.9	22	90	0	66	57	9	11	21	1.63
272862--272915	26	2.1	26	96	0	99	53	5	14	25	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
272873--272935	26	2.5	26	87	5	85	58	4	17	19	1.56
278666--278695	6	4.8	6	95	4	51	3	16	0	80	0.85
287198--287250	16	3.2	16	82	15	72	86	1	9	1	0.71
289506--289567	6	10.8	6	77	16	69	45	1	1	51	1.20
289518--289561	23	1.9	23	90	0	70	47	2	2	47	1.27
289496--289567	17	4.3	16	84	8	81	43	1	1	54	1.17
289499--289550	11	4.6	11	81	11	61	44	1	0	53	1.11
289507--289567	23	2.6	22	82	10	68	45	1	1	50	1.21
290552--290584	17	1.9	17	93	0	57	84	0	15	0	0.61
291363--291566	29	7.0	30	75	12	183	35	31	2	29	1.73
291363--291568	59	3.5	59	87	4	283	35	32	3	29	1.74
303341--304557	204	6.0	204	93	0	1977	36	19	23	20	1.95
304840--304873	17	2.0	17	88	0	50	44	2	0	52	1.16
306688--306945	30	8.7	29	71	11	202	36	31	2	29	1.72
306688--306980	59	5.0	59	84	4	342	35	30	4	29	1.77
309771--309872	52	2.0	52	96	0	186	38	16	7	37	1.78
318413--318539	66	2.0	64	84	3	164	22	16	15	45	1.85
320776--320818	22	2.0	20	82	8	50	67	4	27	0	1.10
324997--325145	69	2.2	69	96	0	280	27	13	18	40	1.88
331135--331188	24	2.3	23	78	15	56	48	3	1	46	1.30
333694--333774	17	4.8	17	78	3	92	37	1	4	56	1.29
333698--333769	33	2.1	34	89	2	110	36	1	5	56	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
335758--336208	29	15.5	29	71	11	230	36	25	2	34	1.71
335758--336206	116	3.9	115	77	8	324	36	25	2	34	1.71
335807--336208	58	7.0	56	78	8	312	36	26	2	34	1.71
345399--345462	32	2.0	32	82	11	78	51	14	3	31	1.57
348317--348356	19	2.1	19	86	9	55	32	10	20	37	1.85
350798--350860	29	2.2	29	91	0	99	30	3	26	39	1.72
350932--351154	59	3.8	58	76	6	209	38	5	21	34	1.77
351052--351279	30	7.6	31	75	10	122	38	4	23	33	1.75
351048--351275	59	3.9	58	75	10	176	37	4	24	34	1.75
351090--351316	30	7.7	29	73	14	151	36	4	23	34	1.77
352378--352422	18	2.4	18	85	10	56	40	2	4	53	1.33
352395--352436	15	2.8	15	79	13	50	35	4	2	57	1.33
353145--353224	17	4.8	16	76	13	63	47	5	1	46	1.32
353145--353223	33	2.4	34	86	2	106	46	5	1	46	1.32
353163--353231	17	4.1	17	83	10	88	50	7	1	40	1.39
353199--353268	27	2.5	28	81	6	88	60	8	0	31	1.27
353629--354416	209	3.8	209	88	1	1121	23	21	17	37	1.94
353629--354416	417	1.9	418	87	0	1148	23	21	17	37	1.94
366367--366435	29	2.3	29	82	2	75	34	8	23	33	1.85
366380--366988	29	20.4	30	66	19	102	36	4	24	34	1.76
366505--366734	59	3.9	59	73	9	168	35	4	22	37	1.74
366633--366976	29	11.4	29	69	15	103	36	2	24	36	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
366653--366834	97	1.9	97	88	0	274	36	2	24	36	1.70
366593--366880	156	1.8	157	81	9	365	36	3	24	35	1.72
366750--366999	30	8.5	30	72	9	129	37	2	24	35	1.70
366750--366999	59	4.3	59	73	9	174	37	2	24	35	1.70
368266--368386	33	3.7	33	75	12	115	52	4	0	42	1.23
368284--368358	18	4.3	18	77	11	68	54	5	0	40	1.23
368267--368386	17	7.4	17	71	12	81	52	5	0	42	1.23
377010--377044	17	2.0	18	88	5	54	60	0	5	34	1.21
379667--379709	18	2.4	18	80	7	52	46	2	0	51	1.13
388202--388231	2	15.0	2	100	0	60	50	0	0	50	1.00

Tables:   1   2   3