genome.fa.s15120.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015120.1 Kokia drynarioides strain JFW-HI SEQ_130164, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  618428

Tables:   1   2   3   

This is table  3  of  3  ( 277 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
588210--588626	199	2.1	199	85	1	541	18	29	16	34	1.94
588382--589004	148	4.2	148	78	5	411	18	29	17	34	1.94
589094--589479	50	7.8	50	76	6	304	18	31	16	33	1.94
589100--589482	99	3.9	99	78	4	369	18	31	16	32	1.94
589095--589479	149	2.6	150	78	3	384	18	31	16	32	1.94
590426--590492	6	11.3	6	77	15	50	5	13	0	80	0.88
590427--590513	21	4.1	21	76	8	79	6	12	0	80	0.90
594813--594858	18	2.6	17	86	6	56	43	2	2	52	1.25
594795--594871	17	4.5	17	76	12	59	42	3	2	50	1.34
595542--595593	21	2.6	21	72	6	54	63	7	1	26	1.32
595610--595655	24	1.9	24	82	8	58	50	0	4	45	1.21
596614--596896	59	4.9	58	81	6	279	32	27	4	34	1.78
596611--596925	88	3.6	86	82	5	348	33	28	4	34	1.77
596613--596917	29	10.5	29	77	7	251	33	27	4	33	1.78
597251--597442	96	2.0	96	83	6	246	29	17	14	39	1.89
608886--609061	75	2.3	75	90	0	262	36	22	21	19	1.95
608961--609498	201	2.6	202	80	5	571	35	19	22	22	1.96
609215--609588	206	1.8	206	80	1	453	35	20	21	21	1.96
609927--610007	17	4.6	17	81	9	83	45	2	2	49	1.28
610658--610688	10	3.2	10	90	9	55	48	6	0	45	1.28
610792--610868	6	13.3	6	76	13	63	41	0	6	51	1.27
610804--610835	11	2.9	11	100	0	64	43	0	9	46	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
610793--610847	22	2.5	22	81	3	65	41	0	7	50	1.30
610791--610824	17	2.0	17	94	0	59	38	0	11	50	1.39
610840--610877	18	2.2	18	85	4	51	52	0	5	42	1.24
612729--613037	30	10.6	29	76	10	229	34	28	3	33	1.75
612776--613073	59	5.1	59	76	8	214	34	28	4	32	1.78
612729--613051	29	11.0	29	74	13	245	35	28	4	32	1.76
613999--614044	18	2.6	18	100	0	92	36	6	6	50	1.54
615137--615378	29	8.3	28	81	8	211	34	29	2	32	1.73
615162--615378	58	3.7	57	83	9	244	35	29	1	32	1.68
615137--615376	87	2.8	85	85	9	290	34	30	2	32	1.73
615191--615423	29	8.0	29	79	8	215	35	29	2	32	1.71
615191--615423	58	4.0	58	83	7	242	35	29	2	32	1.71
616923--617053	28	4.6	29	82	8	142	35	1	25	37	1.65
616926--617053	58	2.2	59	81	4	154	36	1	25	35	1.66
617993--618027	16	2.3	15	90	5	52	54	0	0	45	0.99

Tables:   1   2   3

The End!