genome.fa.s15120.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015120.1 Kokia drynarioides strain JFW-HI SEQ_130164, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  618428

Tables:   1   2   3   

This is table  2  of  3  ( 277 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
396951--397012	30	2.1	30	100	0	124	46	0	3	50	1.17
396951--397002	17	3.3	17	69	20	58	46	0	3	50	1.20
399412--399569	10	16.4	9	68	13	66	61	5	1	31	1.28
399481--399563	30	2.8	29	69	7	78	65	3	2	28	1.22
399468--399570	29	3.6	29	69	8	93	61	2	1	33	1.22
400273--400297	3	8.3	3	100	0	50	64	0	0	36	0.94
400466--400713	10	25.6	9	67	20	92	31	1	6	60	1.31
400614--400673	28	2.2	27	85	11	86	26	1	6	65	1.27
400615--400716	29	3.6	27	76	13	98	27	1	4	65	1.23
400652--400718	21	3.6	18	77	18	66	26	1	5	65	1.24
407548--407584	19	1.9	19	89	10	58	54	16	0	29	1.43
415915--415949	18	1.9	18	94	0	61	25	40	28	5	1.78
422836--422931	6	16.7	6	70	12	67	44	2	2	51	1.25
422839--422931	17	5.4	17	74	6	89	44	2	2	51	1.25
422838--422931	34	2.7	33	83	8	116	43	2	2	52	1.25
422849--422942	23	4.0	23	69	12	57	44	3	3	48	1.34
423563--423647	3	27.0	3	73	9	62	55	1	5	37	1.32
423564--423647	22	3.6	22	73	16	71	55	1	5	36	1.32
424659--425037	58	6.6	58	78	11	354	36	26	3	34	1.72
424660--425037	30	13.1	29	71	14	241	36	26	3	34	1.72
424660--424982	115	2.8	113	77	8	339	36	26	3	33	1.72
424908--425117	58	3.6	57	77	4	190	34	24	4	36	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
425109--425181	28	2.6	28	84	6	85	32	27	6	32	1.83
428701--428745	20	2.2	20	100	0	90	44	15	15	24	1.85
428709--428752	20	2.2	20	87	0	61	54	13	11	20	1.69
431847--432086	100	2.4	100	87	0	338	36	20	26	16	1.94
431872--432374	50	10.2	50	69	8	251	37	19	26	15	1.92
432045--432147	49	2.1	49	83	0	125	37	22	27	12	1.90
432093--432374	100	2.9	99	79	7	297	40	19	25	14	1.90
432916--432959	22	2.0	22	86	8	63	59	4	0	36	1.18
433578--433866	30	9.7	30	79	6	293	36	24	3	34	1.73
433588--433946	117	3.1	117	83	6	370	36	25	4	33	1.75
433588--433934	30	11.8	30	74	15	257	36	25	4	33	1.75
433613--433946	29	11.4	28	74	15	184	36	26	4	33	1.76
433588--433946	59	6.1	56	82	9	332	36	25	4	33	1.75
437402--437440	9	4.4	9	83	3	53	41	2	2	53	1.28
441670--441735	25	2.6	25	81	11	64	40	1	3	54	1.25
451755--451821	18	3.7	18	72	4	71	44	17	13	23	1.85
451763--451838	37	2.1	37	97	0	143	44	18	13	23	1.85
458121--458183	19	3.2	20	80	8	76	60	6	0	33	1.22
464389--464436	17	2.9	17	77	17	57	79	0	10	10	0.95
468862--468914	17	2.9	18	81	13	56	35	1	7	54	1.40
468870--468919	20	2.7	19	85	11	68	30	2	8	60	1.37
468882--468919	20	2.0	20	94	5	69	31	2	7	57	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
469320--469375	28	2.0	28	85	0	76	46	5	3	44	1.43
469599--469724	64	2.0	65	83	10	161	35	11	7	46	1.67
470083--470118	18	2.0	18	94	0	63	44	0	2	52	1.15
470025--470222	104	2.0	100	85	7	269	32	4	10	53	1.54
470187--470222	18	2.0	18	88	0	54	41	0	5	52	1.24
470266--470319	25	2.1	26	86	3	74	38	0	1	59	1.08
472588--472636	25	2.0	25	92	4	82	42	0	0	57	0.99
472594--472650	25	2.3	24	80	14	62	45	0	1	52	1.11
473208--473239	16	2.0	16	93	0	55	21	12	12	53	1.71
478438--478485	24	2.0	24	100	0	96	33	20	8	37	1.83
478585--478617	12	2.5	14	90	9	52	69	0	0	30	0.88
479858--479923	18	3.2	20	70	16	55	42	0	3	54	1.15
481632--481670	19	2.1	19	85	9	53	51	0	0	48	1.00
486806--486849	22	2.0	21	82	4	52	27	0	13	59	1.35
488037--488486	162	2.8	161	77	5	433	24	21	16	38	1.93
488037--488486	54	8.3	54	79	0	342	24	21	16	38	1.93
489098--489169	16	5.2	13	69	21	56	54	0	0	45	0.99
489077--489177	28	3.4	29	90	5	159	48	0	0	50	1.07
489576--489615	21	1.9	21	84	0	53	47	0	12	40	1.41
491316--491344	9	3.3	9	90	9	51	0	0	10	89	0.48
491311--491344	17	2.0	17	94	0	59	0	0	14	85	0.60
498365--498406	12	3.1	14	80	13	52	33	0	2	64	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
499412--499453	14	3.2	13	77	9	50	57	2	2	38	1.25
502402--502431	5	6.0	5	100	0	60	40	0	60	0	0.97
506657--506681	6	4.2	6	100	0	50	32	32	16	20	1.94
506808--506854	6	7.8	6	95	0	85	0	51	0	48	1.00
507594--507631	18	2.1	18	85	9	51	52	5	26	15	1.64
512577--512611	16	2.2	16	89	0	52	48	20	11	20	1.79
514725--514803	17	4.8	17	75	17	76	39	2	3	54	1.32
514767--514813	6	8.0	6	76	4	51	40	0	4	55	1.19
515536--515585	21	2.3	22	86	3	75	58	8	8	26	1.54
516748--517214	30	15.9	29	70	13	230	37	23	2	35	1.70
516753--517174	88	4.8	86	75	11	238	38	23	2	35	1.69
516843--517214	117	3.2	113	79	10	371	38	23	2	35	1.69
516753--517214	29	15.7	30	71	14	261	37	23	2	36	1.70
516843--517302	58	7.9	58	78	10	390	36	22	4	36	1.74
518820--518884	18	3.5	19	81	12	73	41	0	0	58	0.98
519442--519564	61	2.0	61	88	0	183	36	8	17	37	1.80
524731--524770	17	2.4	17	86	0	53	47	2	0	50	1.14
524741--524804	6	10.8	6	73	15	53	46	0	4	48	1.23
524757--524816	17	3.4	17	76	4	57	46	1	5	46	1.34
524762--524816	24	2.3	23	79	11	58	47	1	5	45	1.36
526578--526857	29	9.6	29	76	11	234	36	23	3	36	1.72
530232--530521	145	2.0	145	96	0	535	34	20	18	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
537906--537936	3	10.3	3	100	0	62	67	0	32	0	0.91
542982--543033	2	26.0	2	100	0	104	50	0	0	50	1.00
545325--545386	31	2.0	31	90	0	97	43	12	11	32	1.79
556036--556062	6	4.5	6	100	0	54	85	0	14	0	0.61
556267--556305	7	5.6	7	100	0	78	53	15	30	0	1.42
558795--559012	30	7.4	29	77	10	192	38	18	0	41	1.57
559178--559216	21	2.0	21	90	10	64	15	10	7	66	1.43
561262--561326	17	3.8	17	89	0	103	43	0	3	53	1.16
561264--561340	23	3.4	23	75	18	72	44	1	2	51	1.23
561262--561328	6	11.7	6	74	15	61	44	0	2	52	1.16
563113--563407	30	9.9	30	79	13	258	34	26	3	34	1.73
563148--563407	59	4.4	59	83	6	294	35	25	2	35	1.71
563117--563441	30	10.9	30	79	12	244	35	25	3	35	1.74
563127--563415	29	9.8	28	80	13	171	35	26	3	34	1.74
571404--571433	9	3.3	9	100	0	60	50	13	10	26	1.73
572673--572725	28	1.9	28	85	11	74	28	13	11	47	1.77
576725--576781	29	1.9	30	85	3	80	42	15	8	33	1.78
579318--579369	27	2.0	27	81	7	63	19	5	3	71	1.22
582544--582597	19	2.8	20	72	13	58	40	3	0	55	1.17
582544--582605	20	3.4	17	76	14	61	41	3	0	54	1.16
584587--584741	58	2.7	58	81	7	172	38	5	23	32	1.77
584587--584733	30	5.1	29	72	16	117	38	4	23	34	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
584604--584753	30	5.2	28	75	12	117	37	4	23	35	1.74
584633--584760	58	2.2	57	84	1	166	36	3	25	34	1.74
586975--587139	85	1.9	85	82	0	204	24	20	15	40	1.91
586850--587471	209	3.0	208	82	4	738	23	20	16	39	1.92
587171--587262	48	1.9	48	90	0	148	25	22	13	39	1.90
587182--587343	85	1.9	85	85	2	227	23	22	14	40	1.90
587276--587803	171	3.2	171	83	4	632	24	19	15	39	1.91
587497--587820	160	2.0	160	84	1	416	25	18	16	39	1.91
588132--589002	49	17.6	49	72	5	496	18	29	16	34	1.94
588119--589004	99	8.9	99	76	4	574	19	29	16	34	1.94

Tables:   1   2   3