genome.fa.s15129.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015129.1 Kokia drynarioides strain JFW-HI SEQ_130173, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  947447

Tables:   1   2   3   

This is table  1  of  3  ( 293 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5161--5216	25	2.2	25	83	0	67	33	8	8	48	1.66
5176--5225	25	2.1	24	92	7	84	28	8	14	50	1.70
15434--15472	3	13.3	3	83	5	53	66	5	28	0	1.12
21218--21250	12	2.6	13	85	9	50	81	6	12	0	0.85
30502--30557	28	2.0	27	83	10	69	41	1	1	55	1.21
38528--38570	6	7.2	6	97	0	77	34	46	16	2	1.60
66549--66583	18	1.9	18	88	11	54	31	5	0	62	1.18
66650--67274	206	3.0	206	89	3	903	39	21	10	28	1.87
70487--70548	25	2.6	23	80	14	72	58	1	4	35	1.29
70487--70531	24	1.9	23	90	4	72	60	2	4	33	1.29
70487--70543	24	2.4	22	83	13	69	57	1	3	36	1.26
74590--74629	18	2.2	18	95	0	71	12	10	35	42	1.76
85863--85894	10	3.2	10	95	0	55	9	43	0	46	1.35
89296--89332	15	2.4	16	86	8	51	43	21	16	18	1.88
104071--104122	4	13.0	4	95	0	95	26	0	25	48	1.52
118938--118964	2	13.5	2	100	0	54	0	0	51	48	1.00
125393--125426	18	1.9	17	88	5	50	8	11	20	58	1.59
126050--126114	34	2.0	33	85	8	89	36	9	7	46	1.65
126050--126115	33	2.0	33	82	5	80	36	9	7	46	1.64
127001--127051	22	2.3	22	79	0	57	19	7	11	60	1.55
141913--142003	30	3.0	30	95	0	164	46	23	13	17	1.83
151671--151709	14	2.6	14	84	8	51	74	7	17	0	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
153184--153226	17	2.5	17	77	11	52	44	2	2	51	1.27
154457--154514	29	2.1	29	83	6	75	32	1	8	56	1.40
156846--156885	21	1.9	21	89	0	62	42	0	0	57	0.98
157212--157277	4	16.2	4	81	12	64	65	1	33	0	1.02
157212--157244	17	1.9	17	100	0	66	69	0	30	0	0.88
157212--157278	29	2.3	30	78	14	79	64	1	34	0	1.03
161111--161141	15	2.1	15	93	0	53	67	3	0	29	1.06
163430--163463	11	2.9	12	82	8	52	82	2	0	14	0.79
168790--168902	55	2.1	55	91	0	181	35	10	15	38	1.81
176525--176600	30	2.5	31	85	6	102	27	18	5	48	1.69
176525--176615	30	2.9	32	80	14	100	28	17	6	47	1.73
179678--179717	3	13.3	3	100	0	80	67	0	0	32	0.91
183448--183498	17	2.9	18	74	8	52	23	0	5	70	1.09
183862--183902	22	1.9	22	85	5	57	39	0	2	58	1.11
185694--185746	26	2.0	26	85	7	72	41	3	7	47	1.50
187137--187184	25	1.9	25	86	0	69	31	4	8	56	1.48
196259--196302	14	2.8	16	80	16	56	47	0	0	52	1.00
196644--196688	24	1.9	23	86	4	63	68	4	15	11	1.34
207850--207880	14	2.2	14	100	0	62	45	0	0	54	0.99
208546--208597	26	2.0	27	92	3	88	73	0	1	25	0.94
208572--208622	16	3.1	16	72	13	50	64	3	0	31	1.11
210283--210323	20	2.0	22	85	9	59	58	2	0	39	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
211184--211249	17	4.0	17	78	7	64	50	1	0	48	1.10
216181--216224	22	2.0	22	100	0	88	36	13	18	31	1.90
219183--220474	644	2.0	645	93	0	2194	39	18	14	27	1.90
220069--221355	372	3.5	371	89	3	1935	40	19	13	26	1.88
222983--223041	24	2.5	24	77	0	73	22	6	5	66	1.36
223246--223336	27	3.5	26	73	19	73	68	3	1	27	1.12
225253--225317	12	5.4	12	79	0	76	67	18	7	6	1.36
225253--225317	24	2.7	24	92	0	112	67	18	7	6	1.36
225295--225339	21	2.1	21	84	8	56	66	20	6	6	1.38
225289--225360	33	2.2	33	84	2	90	68	16	6	8	1.37
227657--227920	133	2.0	133	99	0	519	27	17	25	29	1.97
243089--243115	13	2.1	13	100	0	54	18	7	7	66	1.40
243589--243628	21	1.9	21	94	0	71	22	27	27	22	1.99
245374--245418	20	2.2	21	92	4	74	64	6	0	28	1.19
245375--245439	19	3.4	19	83	14	80	60	6	0	33	1.22
246516--246552	2	18.5	2	94	0	65	48	0	2	48	1.15
269791--269855	35	1.9	35	84	6	89	64	6	7	21	1.42
277843--277929	21	4.1	21	96	0	156	22	4	34	37	1.75
291962--292212	135	1.9	135	93	0	439	22	9	31	36	1.86
296775--296822	24	2.0	24	100	0	96	37	4	12	45	1.61
303680--303704	6	4.2	6	100	0	50	64	0	36	0	0.94
305727--305773	21	2.3	21	85	3	60	36	0	6	57	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
305943--305975	13	2.4	14	85	5	50	42	6	18	33	1.75
308736--308807	26	2.8	26	76	0	81	31	4	22	41	1.73
319338--319362	2	12.5	2	100	0	50	48	0	52	0	1.00
320330--320371	21	1.9	23	85	9	61	42	11	11	33	1.78
323467--323505	6	6.7	6	85	2	53	48	0	38	12	1.42
328814--328875	30	2.1	30	85	8	83	48	4	6	40	1.50
328866--328962	30	3.1	32	77	10	94	58	8	6	26	1.51
328894--328982	28	3.0	30	77	8	83	56	10	6	26	1.57
331984--332027	20	2.1	21	83	8	54	31	11	25	31	1.91
333405--334114	198	3.5	198	83	9	896	37	14	11	36	1.82
336740--336839	24	4.1	24	82	7	103	24	20	24	32	1.98
338501--338592	44	2.1	44	89	0	139	36	20	16	26	1.93
338656--338699	23	2.0	22	82	13	54	47	6	2	43	1.42
356821--356892	20	3.7	20	83	9	96	33	1	4	61	1.24
361478--361571	47	2.0	47	97	0	179	26	21	26	25	1.99
361525--361946	158	2.7	158	89	1	657	30	25	22	22	1.99
363737--363771	3	11.7	3	100	0	70	68	0	0	31	0.90
364435--364476	18	2.3	18	84	8	59	38	21	21	19	1.94
364586--364625	19	2.1	19	85	0	53	12	10	42	35	1.76
370920--370945	12	2.2	12	100	0	52	61	0	7	30	1.24
383299--383356	31	1.9	30	93	6	100	44	18	6	29	1.76
384186--384235	17	3.0	17	73	5	57	40	22	0	38	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
386101--386141	19	2.0	21	90	9	68	24	29	0	46	1.53
386294--386352	29	2.0	29	83	9	75	25	40	0	33	1.56
395144--395191	18	2.7	18	83	0	60	22	31	0	45	1.53
395160--395188	6	4.8	6	100	0	58	17	31	0	51	1.45
398905--399055	3	49.0	3	67	10	54	52	3	3	39	1.39
398922--398965	22	2.0	22	86	0	61	61	0	0	38	0.96
398905--399055	15	9.4	15	67	16	61	52	3	3	39	1.39
398974--399022	24	2.0	24	84	7	64	55	6	6	32	1.49
400115--400321	29	7.1	28	77	9	166	37	24	3	35	1.72
400151--400479	58	5.6	58	75	11	248	33	23	5	37	1.78
408917--408984	34	2.0	34	94	2	120	32	20	19	27	1.97
414778--415429	325	2.0	324	98	0	1250	33	13	30	22	1.93
417097--417160	25	2.6	25	97	0	119	43	7	15	32	1.76
423299--423391	46	2.0	46	100	0	186	36	15	10	37	1.82
430384--430491	54	2.0	54	100	0	216	29	14	14	40	1.86
439545--439820	136	2.0	137	97	0	527	38	18	11	32	1.86
453907--454026	62	2.0	59	82	8	143	35	13	10	40	1.78
456142--456166	11	2.3	11	100	0	50	56	0	0	44	0.99
464279--464310	12	2.4	14	90	10	50	3	12	0	84	0.74
470385--470444	24	2.5	24	88	0	93	26	21	25	26	2.00
470472--470680	82	2.5	82	92	0	346	29	25	21	23	1.99
475322--475350	14	2.0	15	93	6	51	48	10	0	41	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
477757--477781	3	8.3	3	100	0	50	32	0	32	36	1.58
477910--477950	18	2.3	18	91	0	64	36	9	24	29	1.87
480661--480693	12	2.7	13	90	9	52	60	0	0	39	0.97
481700--481860	80	2.0	80	100	0	322	34	19	21	24	1.96
481871--481903	17	1.9	17	88	11	50	27	0	6	66	1.15
482097--482252	50	3.1	50	77	6	145	35	14	12	37	1.84
483463--483527	27	2.3	28	86	5	96	72	4	10	12	1.26
483461--483528	29	2.4	29	82	9	95	72	4	11	11	1.27
483483--483564	23	3.2	25	74	11	69	73	1	12	13	1.17
484320--484367	16	2.9	17	93	6	89	68	0	18	12	1.20

Tables:   1   2   3