genome.fa.s15129.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015129.1 Kokia drynarioides strain JFW-HI SEQ_130173, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  947447

Tables:   1   2   3   

This is table  3  of  3  ( 293 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
838230--838277	16	3.1	15	78	6	51	29	4	0	66	1.10
838226--838296	15	4.7	15	78	11	58	33	4	0	61	1.15
838348--838398	21	2.4	21	86	0	66	27	5	0	66	1.14
838380--838413	16	2.2	15	89	5	50	29	2	0	67	1.05
838363--838405	21	2.0	21	100	0	86	23	4	0	72	1.04
838412--838441	11	2.7	11	89	0	51	36	0	0	63	0.95
838463--838647	16	10.9	16	68	21	85	60	3	2	34	1.25
838465--838647	53	3.5	51	81	11	196	60	3	2	34	1.25
838567--838610	21	2.1	21	82	0	52	65	0	2	31	1.05
838479--838614	17	7.8	18	70	23	69	59	2	2	34	1.27
840646--840680	14	2.6	14	90	4	54	0	42	0	57	0.99
842135--842173	20	2.0	20	90	10	62	69	2	0	28	1.02
842359--842398	21	2.0	20	85	5	53	42	7	5	45	1.54
843242--843302	29	2.1	29	100	0	122	40	3	14	40	1.62
844533--844763	51	4.5	51	83	3	257	32	14	23	30	1.94
844527--844763	104	2.3	104	83	4	291	32	14	23	29	1.94
849544--849577	2	17.0	2	93	0	59	50	47	0	2	1.16
849923--850065	23	6.4	23	65	19	61	44	22	21	11	1.85
854122--854250	70	1.9	68	87	6	188	39	3	4	52	1.38
857757--857808	18	2.9	18	94	0	86	48	5	9	36	1.60
858101--858134	17	2.0	17	100	0	68	23	0	29	47	1.52
859859--859927	20	3.2	20	76	11	66	71	13	13	2	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
860754--860846	29	3.2	30	82	10	104	25	10	1	62	1.35
860754--860848	30	3.2	30	81	8	90	26	10	1	62	1.34
860869--860906	18	2.1	18	85	9	51	26	7	0	65	1.19
875204--875236	14	2.3	15	90	10	52	66	0	9	24	1.20
879566--879600	15	2.4	15	90	4	54	82	8	0	8	0.83
881292--881756	59	7.8	60	82	8	520	35	23	2	38	1.67
881292--881756	119	3.9	119	83	5	557	35	23	2	38	1.67
881292--881756	30	15.6	30	82	7	520	35	23	2	38	1.67
882675--882734	29	2.1	29	93	3	104	30	11	10	48	1.72
883689--883764	37	2.1	37	100	0	152	21	10	7	60	1.54
891391--891418	4	7.0	4	100	0	56	75	0	0	25	0.81
892934--892969	18	1.9	19	88	5	56	22	0	2	75	0.94
898690--898723	17	2.0	17	100	0	68	17	29	5	47	1.71
902543--902600	28	2.1	28	100	0	116	31	20	10	37	1.86
902742--902891	69	2.2	69	95	2	268	36	8	10	46	1.67
903241--903273	2	16.5	2	93	0	57	48	0	3	48	1.17
905397--905453	24	2.4	24	90	0	87	26	15	7	50	1.69
907076--907163	38	2.3	38	82	1	106	34	14	21	29	1.93
908773--908853	24	3.4	23	79	6	90	33	14	2	49	1.57
915880--915934	22	2.6	21	85	5	83	50	10	18	20	1.76
924268--924356	36	2.5	37	81	7	112	43	13	14	28	1.83
932747--932896	25	6.1	25	73	6	128	24	16	24	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
932877--932927	26	2.0	26	92	0	84	29	19	19	31	1.97
935085--935167	20	4.2	19	73	8	67	36	20	26	16	1.94
935086--935211	40	3.2	40	78	2	119	34	22	26	16	1.95
935113--935210	20	4.9	20	70	9	74	34	22	24	18	1.96
938211--938266	7	8.0	7	86	9	71	12	3	1	82	0.88
938211--938266	20	2.7	21	83	13	71	12	3	1	82	0.88
938211--938266	27	2.0	28	86	10	80	12	3	1	82	0.88
940750--940875	63	2.0	63	98	0	243	42	19	18	20	1.90
946716--947447	334	2.2	334	93	0	1250	35	20	17	26	1.95

Tables:   1   2   3

The End!