genome.fa.s15131.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015131.1 Kokia drynarioides strain JFW-HI SEQ_130175, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  745397

Tables:   1   2   3   

This is table  1  of  3  ( 285 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
560--595	18	1.9	19	94	5	65	47	0	2	50	1.15
5944--5974	8	3.9	8	95	0	53	35	0	9	54	1.33
11130--11211	40	2.0	41	92	4	139	53	12	9	24	1.68
11355--11447	17	5.4	17	77	11	91	32	29	25	12	1.93
19839--19868	3	10.0	3	92	0	51	30	33	0	36	1.58
25437--25495	24	2.5	24	85	0	82	49	10	13	27	1.74
29792--29858	24	2.8	24	81	2	80	53	8	10	26	1.64
30899--30957	16	3.6	16	70	17	50	30	0	0	69	0.89
30897--30957	24	2.5	23	79	10	68	31	0	0	68	0.89
35509--35535	9	3.0	9	100	0	54	22	22	11	44	1.84
46672--46740	9	7.9	8	73	22	50	60	2	1	34	1.20
46685--46739	18	3.2	17	80	10	58	63	0	1	34	1.05
46803--46854	9	5.6	9	76	17	52	67	0	0	32	0.91
47246--47388	10	15.3	10	67	15	56	31	2	3	62	1.23
47265--47315	19	2.7	20	78	9	61	33	1	1	62	1.17
47265--47324	29	2.1	29	87	6	86	33	3	1	61	1.22
47246--47374	46	2.7	47	74	13	131	31	2	3	62	1.25
47265--47446	18	9.9	19	68	20	61	35	3	1	59	1.24
47308--47343	17	2.2	17	90	5	56	33	5	0	61	1.19
47274--47337	29	2.2	30	86	10	89	32	3	1	62	1.20
47363--47446	9	9.4	9	73	19	61	40	3	0	55	1.17
47620--47664	22	2.0	23	83	12	58	22	6	2	68	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47670--47694	7	3.6	7	100	0	50	40	0	28	32	1.57
56098--56160	24	2.6	24	84	0	81	52	12	11	23	1.71
58146--58219	24	3.1	24	86	0	103	58	9	8	24	1.57
62268--62308	22	1.9	22	85	14	59	53	9	14	21	1.70
62600--62633	16	2.1	16	100	0	68	50	11	17	20	1.77
71116--71208	4	23.2	4	87	0	96	46	21	8	23	1.79
77143--77291	75	2.0	74	86	1	208	30	26	21	20	1.98
78119--78199	30	2.7	30	77	11	76	54	3	1	40	1.26
86093--86139	22	2.2	21	88	3	67	74	2	4	19	1.09
86119--86148	15	1.9	16	93	6	53	66	0	13	20	1.24
88605--88633	14	2.1	14	100	0	58	13	6	20	58	1.58
91361--91404	20	2.2	21	80	15	58	29	2	6	61	1.34
102308--102762	153	3.0	153	97	1	864	35	15	13	35	1.87
109166--109203	14	2.8	14	81	18	53	65	0	0	34	0.93
110339--110388	21	2.3	22	82	6	57	32	0	6	62	1.20
114579--114638	31	1.9	32	90	10	97	73	6	1	18	1.14
114667--114692	13	2.0	13	100	0	52	30	0	0	69	0.89
114963--114999	15	2.5	15	100	0	74	45	18	0	35	1.50
115113--115161	25	2.0	25	84	11	66	30	0	0	69	0.89
115091--115168	28	2.9	27	69	21	65	32	0	2	65	1.06
119660--119718	26	2.2	26	82	11	66	35	0	0	64	0.94
119797--119831	18	2.0	17	88	5	52	65	5	0	28	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
127777--127813	16	2.2	18	85	9	51	48	0	0	51	1.00
130386--130914	126	4.2	126	85	3	611	32	13	28	24	1.93
139765--139855	45	2.0	45	100	0	182	36	32	4	26	1.76
144370--144408	20	1.9	20	84	5	51	46	7	15	30	1.74
145111--145151	19	2.2	19	90	0	64	46	12	4	36	1.63
152455--152543	31	2.9	31	81	0	106	30	20	5	43	1.74
164042--164460	217	1.9	219	83	4	540	34	12	17	34	1.88
171223--171302	20	3.9	20	70	15	56	55	2	0	42	1.13
182589--182669	32	2.6	32	90	2	119	29	19	6	44	1.75
182899--182975	31	2.5	31	81	12	88	45	11	10	32	1.75
182895--182984	31	2.9	30	79	11	83	48	11	11	28	1.73
184908--185256	29	11.8	30	76	10	274	37	25	3	33	1.73
184876--185219	59	5.8	58	79	8	329	37	26	3	31	1.73
184897--185219	118	2.7	117	84	6	379	37	26	3	31	1.73
185153--185379	59	3.9	58	74	7	156	31	22	7	39	1.80
188676--188883	104	2.0	104	95	0	371	29	18	19	33	1.95
192751--192789	17	2.3	17	100	0	78	15	30	17	35	1.91
194496--194525	14	2.1	14	93	0	51	50	0	0	50	1.00
200518--200569	22	2.4	22	93	0	86	42	21	26	9	1.83
201480--201524	23	2.0	23	86	0	63	35	13	15	35	1.87
204034--204129	41	2.3	41	90	0	147	37	26	6	30	1.81
220427--220451	12	2.1	12	100	0	50	16	16	20	48	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
221869--221894	1	26.0	1	100	0	52	100	0	0	0	0.00
229469--229611	76	1.9	77	83	1	189	34	20	5	39	1.76
235287--235411	37	3.4	37	89	0	187	9	19	30	40	1.83
235343--235469	21	6.5	21	66	26	82	7	20	34	37	1.80
235401--235489	37	2.4	37	92	0	142	7	22	35	33	1.83
235343--235470	58	2.2	58	88	0	193	7	20	34	38	1.80
235305--235489	95	1.9	95	89	4	284	8	20	33	38	1.82
251731--251776	21	2.2	21	100	0	92	34	15	8	41	1.78
251926--251970	19	2.4	18	82	7	54	11	6	44	37	1.66
251991--252042	20	2.7	19	87	3	68	26	15	23	34	1.94
252582--252636	15	3.5	16	73	11	60	65	1	1	30	1.13
252800--252828	15	1.9	15	100	0	58	58	0	0	41	0.98
254162--254206	19	2.5	17	82	17	56	51	6	0	42	1.28
254212--254249	18	2.0	19	90	10	60	63	0	2	34	1.09
255507--255551	18	2.4	19	85	14	58	31	2	2	64	1.18
256079--256134	24	2.3	25	84	12	80	64	0	0	35	0.94
258870--258948	39	2.0	39	97	0	149	36	10	16	36	1.82
259291--259367	30	2.6	31	78	17	83	40	10	11	37	1.76
270258--270355	11	8.5	11	68	10	52	63	4	5	27	1.34
270311--270353	22	2.0	22	85	0	59	60	4	9	25	1.47
270630--270701	36	2.0	36	97	0	135	33	9	13	43	1.77
280781--280887	40	2.7	40	92	0	169	37	17	25	19	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
280774--281036	41	6.5	41	82	5	198	36	16	25	20	1.94
281022--281061	20	2.0	20	100	0	80	40	20	30	10	1.85
281529--281567	19	2.0	20	85	9	55	33	5	0	61	1.18
281529--281572	20	2.2	20	84	8	54	34	4	0	61	1.16
285258--285336	29	2.7	29	80	7	97	32	8	24	34	1.86
285312--285382	28	2.4	28	86	6	88	28	7	30	33	1.84
285259--285382	29	4.3	29	79	10	92	30	8	28	33	1.86
285350--285511	58	2.8	58	74	9	166	34	6	24	35	1.80
285468--285676	30	7.1	29	70	13	133	37	4	24	33	1.77
285519--285687	29	5.8	30	70	13	111	35	4	25	34	1.75
285522--285747	59	3.9	57	74	10	165	38	3	23	34	1.74
285563--285737	30	6.0	30	74	12	107	40	4	21	34	1.74
285565--285737	29	5.9	29	73	11	95	39	4	21	34	1.74
289218--289249	16	2.0	16	93	0	55	53	3	18	25	1.59
289740--290164	193	2.2	194	79	4	473	28	17	26	27	1.97
294979--295377	43	9.1	43	79	6	327	27	17	25	30	1.97
299406--299471	29	2.3	29	97	0	123	50	7	3	39	1.46
303918--304019	50	2.0	50	92	0	168	21	12	27	38	1.90
307261--307356	29	3.3	29	91	2	140	51	4	1	43	1.28
310803--310873	17	4.2	16	76	7	70	53	0	1	45	1.09
310815--310873	6	10.5	6	78	14	56	54	0	0	45	0.99
310817--310871	27	2.0	27	92	0	92	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
312150--312210	28	2.2	28	91	5	97	57	9	14	18	1.64
323376--323408	16	2.1	16	100	0	66	57	6	24	12	1.57
323514--324026	29	17.4	29	73	7	349	31	4	29	33	1.78
323514--324023	59	8.7	59	80	9	467	31	4	29	33	1.78
324537--324595	16	3.7	16	88	0	82	22	42	22	13	1.88
325763--325850	17	5.2	16	79	5	68	52	1	1	45	1.15
325775--325850	6	13.5	6	72	18	65	52	1	0	46	1.08
325763--325814	11	4.8	10	80	15	59	51	0	1	46	1.12
325777--325829	27	2.0	27	92	0	88	56	1	0	41	1.10
325783--325847	11	5.9	11	75	10	53	56	1	0	41	1.08

Tables:   1   2   3