genome.fa.s15131.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015131.1 Kokia drynarioides strain JFW-HI SEQ_130175, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  745397

Tables:   1   2   3   

This is table  2  of  3  ( 285 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
328249--328325	6	12.3	6	75	22	61	20	2	0	76	0.90
328255--328325	15	4.5	15	81	11	81	21	2	0	76	0.92
328248--328332	9	9.3	9	76	15	70	21	2	1	75	0.99
330702--330731	16	1.9	16	93	6	53	16	13	0	70	1.18
330698--330739	16	2.6	16	77	7	50	16	9	0	73	1.08
340652--340683	16	2.0	17	88	11	50	46	0	9	43	1.35
342200--342262	30	2.1	29	82	8	74	47	4	3	44	1.40
342259--342418	59	2.7	58	85	2	212	26	13	8	51	1.70
355177--355264	34	2.6	34	81	0	113	42	31	10	15	1.81
360323--360360	19	2.0	20	84	5	51	23	31	2	42	1.68
360508--360551	20	2.2	20	83	0	52	20	31	0	47	1.50
364850--364886	18	2.1	18	90	5	58	32	0	0	67	0.91
388781--388846	22	2.9	22	71	15	62	66	1	6	25	1.23
390536--390576	20	2.0	20	95	0	73	24	26	21	26	2.00
395031--395157	23	5.4	23	82	5	121	44	18	22	13	1.85
395032--395157	46	2.7	47	80	6	148	44	19	23	13	1.85
394984--395133	69	2.1	67	81	11	160	45	18	22	13	1.84
395033--395135	23	4.4	23	87	2	125	45	19	21	13	1.84
404116--404595	158	3.0	158	87	0	663	23	21	24	31	1.98
410287--410802	257	2.0	257	98	0	1005	34	21	17	26	1.95
414845--414874	15	2.0	15	93	0	51	50	6	3	40	1.45
418136--418198	20	3.0	20	76	21	67	14	3	7	74	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
420445--420481	18	2.1	19	90	10	60	72	10	8	8	1.27
421752--421793	17	2.6	17	85	7	52	50	0	23	26	1.50
423759--423792	18	1.9	17	88	5	50	52	2	8	35	1.47
423925--424130	30	6.9	30	76	7	161	42	2	19	35	1.66
423920--424103	58	3.1	58	83	6	228	44	3	19	33	1.67
423920--424134	60	3.6	59	81	5	213	41	2	20	35	1.66
424088--424144	30	1.9	30	89	7	89	33	0	21	45	1.52
424862--424910	22	2.2	22	81	0	53	59	4	4	32	1.35
426999--427041	19	2.3	19	84	11	54	37	2	0	60	1.10
435001--435097	48	2.0	48	95	0	176	27	15	19	37	1.92
436259--436289	14	2.1	15	94	5	55	80	0	6	12	0.89
448209--448602	51	7.7	51	68	13	150	44	3	8	43	1.50
448192--448709	52	10.1	52	67	11	244	45	2	8	43	1.50
448175--448913	307	2.4	304	88	3	1074	45	3	9	42	1.52
448192--448913	151	4.7	151	89	3	1034	44	2	9	43	1.51
450600--450644	20	2.1	22	88	12	67	26	8	11	53	1.65
453454--453492	4	9.8	4	82	0	51	25	30	0	43	1.55
459783--459828	7	6.6	7	85	9	67	84	0	15	0	0.62
459771--459828	21	2.8	20	82	7	71	84	3	12	0	0.74
460233--461272	42	23.9	42	80	6	810	22	18	22	36	1.95
460233--461272	126	8.0	126	79	8	911	22	18	22	36	1.95
460729--460769	20	2.0	20	100	0	82	21	14	4	58	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
460687--460811	62	2.0	62	93	0	214	23	17	16	43	1.88
460770--460889	56	2.1	55	79	11	136	25	21	23	29	1.99
461679--462294	149	4.0	149	81	9	679	43	3	10	43	1.54
461683--462288	308	2.0	304	83	6	780	42	2	10	43	1.54
463591--463656	24	2.8	23	80	11	62	40	3	6	50	1.43
463963--463988	13	2.0	13	100	0	52	69	0	0	30	0.89
464031--464078	23	2.1	23	84	7	62	72	6	2	18	1.15
464029--464146	41	2.8	40	77	13	98	70	7	0	21	1.17
464047--464117	22	3.5	20	75	19	67	71	7	0	21	1.09
465056--465108	21	2.5	21	82	11	65	33	20	11	33	1.88
466353--466380	14	2.0	14	100	0	56	21	21	7	50	1.72
467804--467836	3	11.0	3	93	0	57	30	0	3	66	1.06
468867--468901	18	2.0	17	88	5	52	37	20	0	42	1.52
470634--470690	2	28.0	2	96	3	105	49	0	1	49	1.11
470683--470845	81	2.0	81	95	0	290	42	21	7	28	1.81
471705--471740	18	2.1	18	89	5	56	33	16	2	47	1.61
483036--483095	20	3.0	20	73	20	54	26	0	11	61	1.30
483003--483374	147	2.5	147	86	3	491	32	1	12	52	1.49
483420--483449	5	5.8	5	96	4	51	20	0	0	80	0.72
483530--483583	25	2.1	26	89	3	83	25	0	3	70	1.04
485831--486028	44	4.5	43	82	3	234	49	9	11	29	1.70
495805--495862	28	2.1	28	83	0	71	22	5	6	65	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
495809--495980	60	2.9	59	79	6	168	26	11	8	54	1.64
496248--496297	27	1.9	25	88	8	73	58	10	8	24	1.57
496184--496318	30	4.6	30	76	10	134	51	9	12	25	1.70
501536--501565	2	15.0	2	100	0	60	50	0	0	50	1.00
502393--502431	20	2.0	19	90	5	60	46	0	0	53	1.00
504377--504466	30	3.3	30	62	26	81	37	16	13	32	1.88
505415--505528	59	1.9	59	92	0	192	37	18	15	28	1.92
506523--506594	21	3.4	21	96	0	135	33	30	8	27	1.86
508454--508560	30	3.6	30	93	1	180	43	14	18	23	1.86
513425--513706	30	9.6	29	79	8	261	36	20	2	39	1.68
515415--515449	17	2.1	17	89	10	54	42	0	20	37	1.52
516861--516913	17	3.2	17	94	2	90	41	0	1	56	1.10
520932--520970	2	19.5	2	100	0	78	51	0	0	48	1.00
522334--522381	14	3.4	14	75	16	53	58	4	0	37	1.18
532578--532615	3	12.7	3	100	0	76	68	0	0	31	0.90
533109--533134	1	26.0	1	100	0	52	100	0	0	0	0.00
534349--534564	10	23.1	9	66	16	68	59	4	3	32	1.34
535152--535232	27	2.9	28	75	15	78	29	1	3	65	1.17
535152--535232	28	3.0	27	71	12	67	29	1	3	65	1.17
535246--535278	10	3.0	11	83	16	50	33	3	0	63	1.10
535870--535934	10	6.6	10	78	16	57	36	3	0	60	1.13
535870--535937	19	3.5	19	74	18	59	38	2	0	58	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
542368--542392	2	12.5	2	100	0	50	52	0	0	48	1.00
544744--544916	86	2.0	85	98	1	337	28	17	13	39	1.88
545764--545788	2	12.5	2	100	0	50	52	0	0	48	1.00
545869--545935	31	2.2	30	81	5	80	35	11	11	40	1.79
546656--546688	3	11.0	3	100	0	66	33	0	0	66	0.92
547810--547844	19	1.9	19	88	11	56	65	11	2	20	1.37
549802--549863	32	1.9	32	83	6	81	62	0	3	33	1.11
551186--551218	2	16.5	2	93	0	57	45	0	3	51	1.16
551968--552006	19	2.1	18	90	4	60	58	5	0	35	1.20
555304--555333	3	10.3	3	92	7	53	66	0	0	33	0.92
556776--556816	20	2.2	20	91	8	68	46	0	0	53	1.00
556775--556817	18	2.4	17	79	20	52	48	0	0	51	1.00
558485--558567	31	2.7	31	80	10	89	45	8	16	28	1.77
559278--559302	12	2.1	12	100	0	50	48	0	16	36	1.46
560316--560349	15	2.3	15	90	10	52	55	0	41	2	1.15
560346--560501	3	52.0	3	76	7	120	44	0	55	0	0.99
560302--560501	21	9.5	21	76	13	155	46	0	53	0	1.04
560304--560501	24	7.6	27	74	13	141	46	0	53	0	1.04
563213--563281	29	2.4	30	76	14	72	43	1	2	52	1.25
563216--563290	28	2.6	29	83	10	82	42	1	2	53	1.23
563286--563339	21	2.6	21	85	2	65	38	1	0	59	1.08
566850--566884	14	2.5	14	95	0	61	31	8	14	45	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
568705--568777	6	11.0	7	75	16	59	82	1	16	0	0.75
568705--568765	19	3.0	21	83	13	74	83	1	14	0	0.72
568724--568769	7	6.4	8	85	14	57	80	0	19	0	0.71
569655--569897	98	2.5	98	79	0	279	34	16	27	20	1.95
570075--570220	39	3.7	38	74	15	100	30	26	16	26	1.97
570201--570248	25	1.9	25	87	8	71	29	18	22	29	1.98
570157--570289	64	2.1	65	88	4	198	30	24	19	25	1.98
570239--570806	39	14.4	41	74	7	376	31	24	18	25	1.98
570080--570508	157	2.9	142	77	10	335	31	24	17	27	1.97
570222--570766	79	6.9	79	78	5	512	31	24	17	26	1.97

Tables:   1   2   3