genome.fa.s15131.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015131.1 Kokia drynarioides strain JFW-HI SEQ_130175, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  745397

Tables:   1   2   3   

This is table  3  of  3  ( 285 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
570237--570846	157	3.9	156	78	6	509	31	24	18	25	1.97
570238--570864	40	15.9	40	73	10	309	31	24	18	25	1.97
570241--570846	79	7.7	80	78	8	327	31	24	18	25	1.97
570774--570882	40	2.7	40	78	10	116	31	20	19	29	1.97
570924--571036	40	2.8	40	74	11	115	34	23	15	27	1.94
570757--571014	132	1.9	134	82	4	317	32	23	17	26	1.96
573142--573176	18	2.0	17	94	5	61	42	0	0	57	0.99
574307--574345	3	13.3	3	89	5	62	30	2	0	66	1.05
575349--575380	13	2.3	15	89	10	50	68	15	0	15	1.21
581369--581464	31	3.1	31	96	0	174	35	5	17	41	1.72
582267--582378	41	2.7	41	86	2	127	20	24	24	31	1.98
582398--582505	41	2.6	41	86	0	144	16	31	21	30	1.95
592017--592317	150	2.0	150	98	0	575	24	29	16	29	1.96
594874--595116	122	2.0	122	97	0	459	32	15	16	36	1.89
595161--595304	71	2.0	71	97	0	270	25	14	14	45	1.83
596332--596449	59	2.0	59	100	0	236	38	5	28	27	1.78
617185--617232	25	1.9	25	100	0	96	43	25	4	27	1.72
620023--620076	26	2.1	26	86	6	74	35	22	20	22	1.96
620025--620079	14	4.1	14	74	9	51	30	21	23	23	1.99
628564--628604	16	2.6	16	84	0	55	65	2	0	31	1.05
630920--630970	25	2.0	25	88	0	75	39	3	0	56	1.18
635270--635362	17	5.5	17	65	14	57	59	1	2	37	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
641508--641538	7	4.4	7	100	0	62	25	45	0	29	1.54
647207--647266	10	6.5	10	79	14	67	28	1	0	70	0.97
647209--647265	18	3.2	18	87	5	80	29	1	0	68	1.00
647208--647269	27	2.3	27	80	5	81	32	1	0	66	1.02
647218--647268	17	3.0	16	83	11	66	29	1	0	68	1.00
647574--647604	2	15.5	2	100	0	62	51	0	0	48	1.00
647732--647821	45	2.0	45	100	0	180	42	4	15	37	1.67
689759--689818	29	2.0	32	83	9	81	46	0	5	48	1.24
689757--689826	16	4.4	16	72	18	58	50	0	4	45	1.21
691475--691533	31	1.9	31	93	6	102	27	13	27	32	1.94
695796--695935	62	2.2	61	76	9	140	47	9	17	25	1.77
696418--696451	17	2.0	17	100	0	68	11	23	29	35	1.90
696487--696519	16	2.1	16	100	0	66	42	6	33	18	1.75
696555--696777	111	2.0	111	98	1	430	23	17	22	35	1.95
702386--702450	26	2.4	25	74	20	60	43	6	1	49	1.37
707861--707929	29	2.4	29	87	4	104	24	21	23	30	1.99
717696--717734	17	2.3	17	90	0	60	46	25	12	15	1.81
722029--722061	17	2.0	17	88	5	50	57	12	27	3	1.49
723715--723749	17	2.1	16	89	5	52	37	2	0	60	1.12
729519--729574	20	2.8	19	81	5	67	41	1	1	55	1.21
730075--730112	18	2.2	18	86	13	53	21	0	5	73	1.02
730941--730977	13	2.6	15	83	8	51	45	5	2	45	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
734056--734097	21	2.0	21	85	0	57	42	7	2	47	1.43

Tables:   1   2   3

The End!